Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc155999g00001 TCGGTTGAAGATGAGTTGGAGGGTGGTGCCCGTGCAATTACCACTATCGAGGATGTTATGAACCAAACAGATGAAACTTTCTGTTGGATCCTGGCAGAGATTATGTCTGTTGAGGGTGGGGTGAACGGTTGGTGTTATCTATCGTGTTTTAAATGTGCGAAGAAAGTGGTGGATGTCAAGAACGGCTATCAGTGCATCAGATGTAAAAGAATTACTGTGGATCCAACTCTAAGGTATAAGCTTCATGCCATAGTTGCGGATGGCACTGGCTGCCTCAATCTTATGATCTGGAATGATGAGGCAAAGCAGATTATTGGTCAATCTGCTAAAGAAGTTCGAGATTCAGAGAAAGGCAAAAATGTTAATTCACTTCCCAAGGCTATTCAAGCACTTCTTGAGAAGAAGTTCCTGTTTAAGGTTTCAGTCTCTACTCAGAATGTGAATTCCATAGATCACATGTATGCTGTTGAGAAGATATGTGATGATGAAAGACTGCTTGGAATATACTCTTCAGCAAATTCTATGGAAATCGGAGATCTGCCGAAGCTGATTCGCAGGCTTCTGGTGCAGGAATTGTCTCGCT 583 0.4254 SVEDELEGGARAITTIEDVMNQTDETFCWILAEIMSVEGGVNGWCYLSCFKCAKKVVDVKNGYQCIRCKRITVDPTLRYKLHAIVADGTGCLNLMIWNDEAKQIIGQSAKEVRDSEKGKNVNSLPKAIQALLEKKFLFKVSVSTQNVNSIDHMYAVEKICDDERLLGIYSSANSMEIGDLPKLIRRLLVQELSR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc155999g00001 194 CDD RPA1_DBD_C 30 148 IPR047192 -
Stsc155999g00001 194 Gene3D - 3 163 IPR012340 -
Stsc155999g00001 194 SUPERFAMILY Nucleic acid-binding proteins 15 151 IPR012340 -
Stsc155999g00001 194 PANTHER OS03G0429900 PROTEIN 42 157 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc155999g00001 194 Pfam Replication factor-A C terminal domain 42 148 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc155999g00001 Stsc-Chr155999 867 1854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc155999g00001 46 149 Core DNA Replication Machinery Family AT5G08020 37.383 8.30e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc155999g00001 - - ahf:112718168 175.637