Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc155548g00001 GCTAAAGTTGAAAACATTAAGGAGGTCTGGGATGTATTGCAAGTTGGAAACAATGCCAGAGCAGTGGGAAGTAATAACGTTAACGAGCATAGTAGTCGATCTCACTGCATGCTTTGTATAATGGTAAAGGCTAAAAATTTGCTGAATGGCGAGTGTACCAAGAGCAAGCTTTGGCTTGTGGATTTGGCGGGTAGTGAGAGACTTGCAAAGACTGATGTACAGGGGGAGCGACTTAAGGAAGCGCAAAATATCAATCGATCTCTTTCGGCTCTTGGCGATGTTATATCTGCTTTAGCAGCCAAGAGTAGTCACATTCCCTATAGGAACTCAAAATTGACACATTTACTTCAAGACTCTTTGGGGGGTGACGCCAAAACTTTGATGTTCGTGCAAATCAGTCCATCTGACCAGGACTTAGGTGAAACGCTCAGCTCACTTAATTTTGCAACAAGAGTGACAGGCGTTGAGTTAGGTCCTGTTAAGAAGCAAGTTGACACAAGTGAACTTCAAAAGACAAAAGCAATGCTCGAAAAGGCAAGGAGTGAATGCCGAATGAAAGATGAATCAATACGGAAACTAGAAGACAATTTGCAAAGCATGGAGAACAAGGCCAAAGGAAAGGATAATATTCACAGAAATCTACATGAAAAGATTAAAGAACTTGAAGGCCAGGTTGAGTTGAAGACATCCATGCAAAACCAGTCAGAAAAACAAATTTCTCAGTTGTCAGAGAAATTGAAGGGAAAAGAGGAAACATGCACTACTCTTCAACATAAGGT 779 0.4134 AKVENIKEVWDVLQVGNNARAVGSNNVNEHSSRSHCMLCIMVKAKNLLNGECTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISALAAKSSHIPYRNSKLTHLLQDSLGGDAKTLMFVQISPSDQDLGETLSSLNFATRVTGVELGPVKKQVDTSELQKTKAMLEKARSECRMKDESIRKLEDNLQSMENKAKGKDNIHRNLHEKIKELEGQVELKTSMQNQSEKQISQLSEKLKGKEETCTTLQHKV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc155548g00001 260 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 238 IPR027640 GO:0003777|GO:0007018
Stsc155548g00001 260 ProSitePatterns Kinesin motor domain signature. 55 66 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc155548g00001 260 Gene3D Kinesin motor domain 1 196 IPR036961 -
Stsc155548g00001 260 ProSiteProfiles Kinesin motor domain profile. 1 155 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc155548g00001 260 SUPERFAMILY Tropomyosin 161 257 - -
Stsc155548g00001 260 Pfam Kinesin motor domain 2 153 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc155548g00001 260 SMART kinesin_4 2 163 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc155548g00001 260 MobiDBLite consensus disorder prediction 230 260 - -
Stsc155548g00001 260 MobiDBLite consensus disorder prediction 242 260 - -
Stsc155548g00001 260 Coils Coil 232 259 - -
Stsc155548g00001 260 PRINTS Kinesin heavy chain signature 56 74 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc155548g00001 260 PRINTS Kinesin heavy chain signature 25 42 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc155548g00001 260 PRINTS Kinesin heavy chain signature 105 126 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc155548g00001 260 Coils Coil 176 210 - -
Stsc155548g00001 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 191 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc155548g00001 Stsc-Chr155548 1091 2292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc155548g00001 3 208 Calmodulin-binding Proteins AT5G65930 42.718 1.36e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc155548g00001 K10406 - gmx:100800016 455.677