Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc155524g00001 ATGTCTAATGGGAGTCTAGAAACATTGTTGCACAACAACGCTGAAGATAGAGAGTCCACAAATTTGAATCTCAACTTCATTCAAAGGGTAAATATTGCTCTTGATTTAGCTTTTGCATTGGATTATCTTCACAATGATTTAGAAGAAGCTGTAGTTCATTGTGATATCAAGCCAAGCAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTCGGATTAGCTAGACTCATTCATGGTGCTACAAGCCGTTCTAGCAGTGGTCAAGGTAGCTCCTTTGCAATTAAGGGAACCGTTGGATATATTCCACCAGAGTATGGAGGAGGTGGGTCAGTGTCAAGAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTCGCTGGAAAGAGGCCAACTGATAGCATGTTTGGTGAAGGTCTAAACCTTCGCAGTTTCTGTAACATGGCAACGGCAGAAGGAATCATTGAGATTGTTAATTCAAGATTGCTCATTCCAATTGATGAACAAGATCAAGGAAGAAGGGTCATCACAAGGAAGCAAAATATGGAAGACACCATTGGAGAGTGTCTTGTGTTGTTTGCTAGGATTGGAATTGCATGTTCTGAAGAATCTCCCTCTCACCGAATGGGCATAAAAGATGTCATAGTGGAGTTACATGCAATTAAACAGAAGCTGCTTTGCTGCTTTCATAAAGATGAGCTGCTTTCACTAATTGGATTCATCAGAGTTGGATTACTATGCAAGTATCCATTTGTTGCTTTATATGAATTGCTCTGTGTT 795 0.4038 MSNGSLETLLHNNAEDRESTNLNLNFIQRVNIALDLAFALDYLHNDLEEAVVHCDIKPSNVLLDDDMVAHLGDFGLARLIHGATSRSSSGQGSSFAIKGTVGYIPPEYGGGGSVSREGDMYSYGILLLEMLAGKRPTDSMFGEGLNLRSFCNMATAEGIIEIVNSRLLIPIDEQDQGRRVITRKQNMEDTIGECLVLFARIGIACSEESPSHRMGIKDVIVELHAIKQKLLCCFHKDELLSLIGFIRVGLLCKYPFVALYELLCV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc155524g00001 265 SMART serkin_6 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc155524g00001 265 PIRSF ILK 1 143 - -
Stsc155524g00001 265 PIRSF ILK 198 232 - -
Stsc155524g00001 265 SUPERFAMILY Protein kinase-like (PK-like) 1 223 IPR011009 -
Stsc155524g00001 265 Gene3D Transferase(Phosphotransferase) domain 1 1 237 - -
Stsc155524g00001 265 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 236 - -
Stsc155524g00001 265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Stsc155524g00001 265 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 228 - -
Stsc155524g00001 265 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc155524g00001 265 Pfam Protein kinase domain 3 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc155524g00001 Stsc-Chr155524 693 1631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc155524g00001 1 231 Receptor kinase-like Gene Family AT3G47570 43.534 1.32e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc155524g00001 Pkinase 4.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc155524g00001 - - ahf:112702394 347.051