Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc155419g00001 ATGGATGAAAGGATCATGAATGGAAATTGGTACAAAGAGCCTCATTTCTTTGTAATACAGAAATTCATGTGCTTATTGGCTCTATGCCATACTGCAATATCTGAAGTTGATGAGAAAACTGCCAAAGTTTCGTATGAAGCCGAGTCACCGGATGAGGCAGCTTTTTTCATAGCTGCTAGAGAACCTGGATTTGAGTTTTATGAAAGGACACAGTTAACTATTTTGCTGCGCGAGCTCAATTCTGCATCAGGCAAGATTACTGAAAGGACCTATAAACTTTTGAATATATTACAATTTACTATTGCAAGAAAGAGGATGTCGGTAATAGTGAGAGATGAGGAGGGTGAGCTACTACTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAATGGCTCGCAAAGGATGGAAGGGAGTTTGAATAG 423 0.3995 MDERIMNGNWYKEPHFFVIQKFMCLLALCHTAISEVDEKTAKVSYEAESPDEAAFFIAAREPGFEFYERTQLTILLRELNSASGKITERTYKLLNILQFTIARKRMSVIVRDEEGELLLLSKGADSVMFEWLAKDGREFE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc155419g00001 140 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 4 130 IPR023299 GO:0000166
Stsc155419g00001 140 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 132 - -
Stsc155419g00001 140 Gene3D - 3 138 IPR023299 GO:0000166
Stsc155419g00001 140 Pfam Cation transport ATPase (P-type) 28 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc155419g00001 Stsc-Chr155419 1835 2446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc155419g00001 2 140 Primary Pumps ATPases AT1G68710 70.504 2.76e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc155419g00001 K01530 - gmx:100799312 211.075