Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc154g00007 ATGAAAGGAGCGTCTATGTTCTTCGCCACAAAGAATGTCGCCAACAATGATAACGATGAAGTTGAATATGTGCTAAGTGATTCATCCATGCTTCTGGTTAAGGATAATCCCTTAAGTTTGAGGCCATACTTACTTTTTAATCTTGATCCAATATTAACAAAACCATGGCATAAATTGTCCACATGGTTCCAAAGTAACATTTCCACACCATTTGAGACAGAACATGGGGCAATGTTTTGGGGTTATGCTTGTCATGTGCCTAAACTTAATGAAATTTTCAATGATGCCAAGGCAAGTGATGCTCAAATAGTTAGCAAGTTGTTACTTGATGACAACTGCAAGGGTGTGTTCGAGGGTTTGAAATCGTTGGTTGATGTTGGTGGAGGAAATGAAACTGTTGCGAAGGCCATTGCCAAATCATTTCCAGGGTTAGAGTGCACTGTTCTTGATCTCCCACATGTTATTGCTGGCTTAGAAGGAAGACAACCTTAA 492 0.3984 MKGASMFFATKNVANNDNDEVEYVLSDSSMLLVKDNPLSLRPYLLFNLDPILTKPWHKLSTWFQSNISTPFETEHGAMFWGYACHVPKLNEIFNDAKASDAQIVSKLLLDDNCKGVFEGLKSLVDVGGGNETVAKAIAKSFPGLECTVLDLPHVIAGLEGRQP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc154g00007 163 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 37 157 IPR029063 -
Stsc154g00007 163 Pfam O-methyltransferase domain 56 156 IPR001077 GO:0008171
Stsc154g00007 163 PANTHER O-METHYLTRANSFERASE 8 156 IPR016461 GO:0008168
Stsc154g00007 163 Gene3D Vaccinia Virus protein VP39 33 162 IPR029063 -
Stsc154g00007 163 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 163 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc154g00007 Stsc-Chr154 42387 46574 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc154g00007 5 155 Monolignol Biosynthesis Gene Families AT5G54160 32.237 1.10e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc154g00007 - K16040 aip:107606886 208.764