Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc154g00003 ATGTCTCTTAATTGTGCTGTTAAATTAGGCATACCTGATGCCATTTACAATTATGGACAATCCATGCCACTCTCACAACTCATTGCTTCCCTCTCAATTCACCCATCAAAAACCTCTTCCATCCAACGCTTGATGAGAATCTTGATCCATTCTGGTTTCTTCGCCGCGAAGAATGTTGCCGAGGATGATGATTACGAAGTTGAATATGTGTTGACTTATTCCTCCATGCTTCTGCTTAAGGACAACCCCTTAAGTGAATTTGCTTGTCATGTGCCTGAAATTAATAAAATTTTCAATGATGCCATGGAAAGTGATAGCCGACTGGTTAGTAAGTTGTTACTTGATGATAAGTGCAAGCGTGTGTTCGAGGGTTTGAAATCGTTGGTTGATGTTGGTGGAGGTACTGGAACTATTGCAAAGGCCGTAGCGAAATCATTTCCAGGGTTAGAGTGCACTGTTCTTGATCTCTCGCATGTTATTGCTGGCTTAGAAGGAAGTGACAACCTTAAATATATAGGAGGGGACATGTTTGAGCTCATTCCTCCATCTGATGCCATTTTGTTGAAGGCGGCGTGCAGCATACTGATACGCTCCGATCTCGACAAGTGCACCGAATCGTACAAGTAA 627 0.4258 MSLNCAVKLGIPDAIYNYGQSMPLSQLIASLSIHPSKTSSIQRLMRILIHSGFFAAKNVAEDDDYEVEYVLTYSSMLLLKDNPLSEFACHVPEINKIFNDAMESDSRLVSKLLLDDKCKRVFEGLKSLVDVGGGTGTIAKAVAKSFPGLECTVLDLSHVIAGLEGSDNLKYIGGDMFELIPPSDAILLKAACSILIRSDLDKCTESYK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc154g00003 208 Pfam Dimerisation domain 1 48 IPR012967 GO:0046983
Stsc154g00003 208 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 208 IPR016461 GO:0008168
Stsc154g00003 208 Gene3D Vaccinia Virus protein VP39 75 205 IPR029063 -
Stsc154g00003 208 SUPERFAMILY "Winged helix" DNA-binding domain 1 83 IPR036390 -
Stsc154g00003 208 Pfam O-methyltransferase domain 89 191 IPR001077 GO:0008171
Stsc154g00003 208 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 86 192 IPR029063 -
Stsc154g00003 208 Gene3D - 1 74 IPR036388 -
Stsc154g00003 208 PANTHER O-METHYLTRANSFERASE 1 203 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc154g00003 Stsc-Chr154 18193 19286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc154g00003 1 189 Monolignol Biosynthesis Gene Families AT3G53140 30.126 8.51e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc154g00003 - - aip:107609507 240.35