Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc154706g00003 ATGCAGCTATCCATTAAGGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACGGTTTTCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAAATCAAGCCGAAGATAGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGGTATGGTTGATGACATCATATGGGATGTGGTGCAATTCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTGA 255 0.4314 MQLSIKAGGVGLTLTAASTVFFAELSWTPGDLNQAEDSAHRIGQVSSVNIYYLLANGMVDDIIWDVVQFKLDNLGQMLDGHENT 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc154706g00003 84 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 82 IPR027417 -
Stsc154706g00003 84 Gene3D - 1 84 IPR027417 -
Stsc154706g00003 84 CDD SF2_C_SNF 3 54 - -
Stsc154706g00003 84 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc154706g00003 Stsc-Chr154706 1050 2229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc154706g00003 1 83 RAD5 or RAD16-like Gene Family AT1G11100 36.145 6.74e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc154706g00003 K14440 - twl:119998775 149.828