Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc154542g00001 ATGACGATCAACAACAACAACGAAACTGCAAAGCTAATGACAATGGATGACGAGGTTAATTCAAGAGGATATAGTCTCAGCGGCAAGATCATGCTAACCGCCATTATCGTCCTCTTCTTCCTCGTCCTCCTCATGCTCTCTCTCCACCTTTACGCTCGCTGGTACCTCACCCGCGCCCGCCGCCGCCACAACCTCCGCCGCAACCTTCGCCGCCGCCGCACCAACATCGTCTTTTACATCGACCCTCCCACGCTCTCTGCATCTCAAGGTCTTGACCCCGCGCTCCTTGCCTCCATCCCTATCTTCACCTACCAACCCAAGCCGCCCGCCGACCACCCGCCGGAATGCGCCGTGTGCTTGTCGGAGTTCGAACCGGGAGAAACTGGCCGGATCTTGCCCAAATGCAACCACGTGTTTCACACCGACTGCATAGATATGTGGTTCCATTCTCATGCCACGTGTCCGCTCTGCAGAGCTCCGGTTGAGCCTCAACCCGAACCAGAAACCCGACCCGAAGAGTTTGTTATAACGGTTTGCGAAGGCGAAACCGGTTCGAGCTCGGGGATCTGCCCGCAAGAACTGAACCGGAATGGAACCGGAAACGGAAGGGAGAGGAGGAAGCTTTCGCCGGTGACGGTCGAGGTTCCGGCGAGGAATTGCGAGAGTTTTCGCGACGAGTCCGGGGGTCACGAGTCTCCGCCGTCATCGTCGTCATCGTTTAGGTCTCCGATGAGTCGAATGCTTTCGTTCAAGAGAATCCTCAGCAGGGAACGGAAGGGGAGCGTGTCTCCGTCTTCAATCGCCGCGTGTGGCGGTGGTAGTTGTAGTTCCGCCGCTGAGGTGGGCGACGTAGAGCGAGATAGTGAGAAAGAGGAGAGTCTGAAATTGGCGAGTTCGTGA 900 0.57 MTINNNNETAKLMTMDDEVNSRGYSLSGKIMLTAIIVLFFLVLLMLSLHLYARWYLTRARRRHNLRRNLRRRRTNIVFYIDPPTLSASQGLDPALLASIPIFTYQPKPPADHPPECAVCLSEFEPGETGRILPKCNHVFHTDCIDMWFHSHATCPLCRAPVEPQPEPETRPEEFVITVCEGETGSSSGICPQELNRNGTGNGRERRKLSPVTVEVPARNCESFRDESGGHESPPSSSSSFRSPMSRMLSFKRILSRERKGSVSPSSIAACGGGSCSSAAEVGDVERDSEKEESLKLASS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc154542g00001 299 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 166 IPR044675 -
Stsc154542g00001 299 Pfam Ring finger domain 115 158 IPR001841 -
Stsc154542g00001 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 165 IPR013083 -
Stsc154542g00001 299 MobiDBLite consensus disorder prediction 183 299 - -
Stsc154542g00001 299 CDD RING-H2_EL5-like 115 158 - -
Stsc154542g00001 299 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Stsc154542g00001 299 MobiDBLite consensus disorder prediction 229 245 - -
Stsc154542g00001 299 SMART ring_2 116 157 IPR001841 -
Stsc154542g00001 299 MobiDBLite consensus disorder prediction 282 299 - -
Stsc154542g00001 299 FunFam E3 ubiquitin-protein ligase ATL6 82 164 - -
Stsc154542g00001 299 SUPERFAMILY RING/U-box 109 165 - -
Stsc154542g00001 299 MobiDBLite consensus disorder prediction 183 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc154542g00001 Stsc-Chr154542 2011 3422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc154542g00001 21 290 Rapid Response to Elicitors AT3G16720 49.123 3.25e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc154542g00001 - - gmx:100791545 242.662