Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc154282g00001 ATGCCGAGGTGCAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAACGTATGCCATTGGCGGTAGCGAACATCCTACTATTATTAGCGAAGGCAATCGCTTTGTGGCTCCTGATGACAACAATGCTAAAGAGGTCACAAAGAGAGTAACCAAGGATGACTGGTCAGGGTGGCAATGGAGATCGATCGATGATGAGTTTGAGAATGGAGCATTTTTCGTACAATCTGGACCCGAAATGAAAACCAGACCATTCGGACTGAAGGATATGATTACACCAAAGCCTAGTTCATATGTTCAAAGACTTACTCGTAATGCTGGCTCTCTTAAATGTAGAGTTGGTGAACCTTGCTAG 366 0.429 MPRCRYGFVHVVNNDYTHWETYAIGGSEHPTIISEGNRFVAPDDNNAKEVTKRVTKDDWSGWQWRSIDDEFENGAFFVQSGPEMKTRPFGLKDMITPKPSSYVQRLTRNAGSLKCRVGEPC 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc154282g00001 121 Gene3D - 1 114 IPR012334 -
Stsc154282g00001 121 PANTHER PECTATE LYASE 18-RELATED 1 119 IPR045032 GO:0030570
Stsc154282g00001 121 SUPERFAMILY Pectin lyase-like 1 121 IPR011050 -
Stsc154282g00001 121 PRINTS Pollen allergen Amb family signature 62 86 IPR018082 -
Stsc154282g00001 121 PRINTS Pollen allergen Amb family signature 22 41 IPR018082 -
Stsc154282g00001 121 PRINTS Pollen allergen Amb family signature 92 115 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc154282g00001 Stsc-Chr154282 3507 4160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc154282g00001 1 121 Polysaccharide Lyase AT1G14420 53.906 7.61e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc154282g00001 K01728 - vum:124830021 189.504