Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc154214g00001 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAACACTACGACGAGGCAAGTGACGTTCTCAAAGAGAAGGAACGGTCTCCTCAAGAAGACCAATGAGCTCTCTGTCCTCTGTGATGCTCAGATCGGACTCATCATCTTCTCCAACACTGGCAAGCTCTTTCAATACTCCTCACACCCCTTCACCATGGATCAAATCATTCAAAACTATCAACGAGCCACAGGAGGAGGAGTACCACATCATCCTCAGGAAGAAGATTTATTGAGTGAGATTGCAATGCTTAGGCGTCAAAATCTGAGCCTTGAGATGGGGATTCAGCGCTACCTTGGACTTGGTGGTGGTGGCCAATATGAAGAATTGACTCAGCTTGAACAACAACTTGAAAACTCTCTTTCAAGGCTTCGAAACCGTCACAATGAGCTCTTGCAGCAGCATTTGGACAATCTCCGAAGGAAGGAAAGAATCTTGCAACATGAAAACTGCAGTTTGTCCAACTGGGAGCAGCAGGGTGTAATGGTGGAGTTTGAGACAAGTAACAAAGCAGTAATAATGGATGAGTTGGCATTCTATGAAGATGAGCAGCAAGCTTCAGGTTCAGCTTCTGCTGCTGCCAGCATACTTCAACTTGGTGCACCACATGCAGAGCAGCAGCAGCAGCTTCCTCCTCCATATCCATATGATCTTCAGCTTGCACAGCCCAATATTCATCATCATCATCACTCACTCACCGGACTGCTCCTCGGCCCCCCTCACCCACTCCCACCATATAATCAAAATGGCATGGTGATACACAACAACGAACGATACTTCATTCCCTACAATGCATCATGA 834 0.464 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIIFSNTGKLFQYSSHPFTMDQIIQNYQRATGGGVPHHPQEEDLLSEIAMLRRQNLSLEMGIQRYLGLGGGGQYEELTQLEQQLENSLSRLRNRHNELLQQHLDNLRRKERILQHENCSLSNWEQQGVMVEFETSNKAVIMDELAFYEDEQQASGSASAAASILQLGAPHAEQQQQLPPPYPYDLQLAQPNIHHHHHSLTGLLLGPPHPLPPYNQNGMVIHNNERYFIPYNAS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc154214g00001 277 ProSiteProfiles K-box domain profile. 85 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc154214g00001 277 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Stsc154214g00001 277 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Stsc154214g00001 277 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc154214g00001 277 Coils Coil 118 160 - -
Stsc154214g00001 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc154214g00001 277 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc154214g00001 277 Pfam K-box region 82 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc154214g00001 Stsc-Chr154214 1758 2797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc154214g00001 1 236 MADS-box Gene Family AT5G23260 42.570 1.43e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc154214g00001 K-box 4.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc154214g00001 - - adu:107471830 279.641