Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1540g00001 ATGGTTGATAATGATATCAAACCCATTTTTCTCTCCCAAATTTCTCAAACTCCTAAACTTGAATCCTTAGATCACCATAGCCCCATTTTTCTCTCCCAAATCTTTCAAACTCCTAAAGTTGAATATTTAGATCACTATAATCCCATTTTTCTCTCCAAAATCCCTCAAACTCCTAAACCTGAATCCTTAGATCATCATAGCTCAGGGAGTTTTGCTACCCCACCTAGTGATTCTGCAAATTCAGCCACCAAAAGTGATGCAAATCAAACCGAAATCAAAAGAAAAACAACCTTTGATATTGAGAGGTACATTCTTGTACCCCGTGTAAGCGCTAACAATGATAATCCTTTCTTAGGATTGAAAAAGCCTCGTGGCCGGCCACGTGGCTCGAAGAACAAGCCGAAGCCACCCATTTTCATAAGGGAGGTAAACGAACATGGCATGCGTCCGATCCTTATTCAGATGGCCCCAGGAGTTGATGTGACTCAGGCTTTAATCAACTTTGCCGTGCGTCGCCGTATCGGAATATCGATTCTCAGTGCATGTGGATCGATCTCCGAGGCGACGATTCACAACACACTCCCCTTAAACGCTAACCCAATTGGCTTACCCATGAGAGGACCGTTTAATATGATGTCCCTATCAGGAACCTATTATGATGGCCATGTACAACCTGCATCTTCTTCCTTCTCGATTCTTCTTGGAGGAACACATGGCCAAGTTTTTGGTGGGATCGTTGCTGGGAAAGTTGTGGCAGCAGGAACTGTTAAAGTTATGGCTGCCTCGTTCAAGAGGACTGAGTTTCATGCGCTGCAACTCAATGTAAATGAAGAGGACAACAACATTAATAACAAAGAGAATAATAACGTTTCTAGGATATTTACATATAAACCTGATAATCCTAGTATAGTTACTCAATGA 921 0.4202 MVDNDIKPIFLSQISQTPKLESLDHHSPIFLSQIFQTPKVEYLDHYNPIFLSKIPQTPKPESLDHHSSGSFATPPSDSANSATKSDANQTEIKRKTTFDIERYILVPRVSANNDNPFLGLKKPRGRPRGSKNKPKPPIFIREVNEHGMRPILIQMAPGVDVTQALINFAVRRRIGISILSACGSISEATIHNTLPLNANPIGLPMRGPFNMMSLSGTYYDGHVQPASSSFSILLGGTHGQVFGGIVAGKVVAAGTVKVMAASFKRTEFHALQLNVNEEDNNINNKENNNVSRIFTYKPDNPSIVTQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1540g00001 306 Coils Coil 268 288 - -
Stsc1540g00001 306 ProSiteProfiles PPC domain profile profile. 145 285 IPR005175 -
Stsc1540g00001 306 MobiDBLite consensus disorder prediction 61 87 - -
Stsc1540g00001 306 MobiDBLite consensus disorder prediction 115 137 - -
Stsc1540g00001 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 264 IPR005175 -
Stsc1540g00001 306 CDD DUF296 149 263 IPR005175 -
Stsc1540g00001 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 80 285 IPR014476 GO:0003680
Stsc1540g00001 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 271 - -
Stsc1540g00001 306 Gene3D - 148 287 - -
Stsc1540g00001 306 MobiDBLite consensus disorder prediction 57 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1540g00001 Stsc-Chr1540 4785 5705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1540g00001 120 291 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.028 4.86e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1540g00001 - - adu:107496595 276.944