Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153g00004 ATGGCGGAACTCGACCATTCTCTCTCCGAGAAGAAAAAGAAGAAGAACAAGAAGCACACCGATGACGATACCACCACCACCACCAACACAGACACCACCGTCGCCGCCGCCTCAGACTTCATGATCAAGCCACAGAGCTTCACCCCAACCTTAGACACATCACAATGGCCAATCCTCCTCAAGAACTACGACCGCCTCAACGTCCGTACCGGTCACTACACTCCAATCCCCTCCGGCTACTCCCCATTGAAGCGCCCCCTCGCCGATTACCTCAAATACGGCGTCCTCAACCTCGATAAGCCCGCCAACCCTTCCTCCCATGAGGTCGTTGCTTGGATCAAGCGAATCCTCCGTGTCGAAAAAACCGGCCACAGCGGAACCCTAGACCCTAAGGTCACCGGAAACTTGATCGTCTGCATCGACCGTGCGACGCGGTTGGTGAAATCTCAGCAAGGCGCAGGTAAGGAGTATGTCTGTGTCGCCCGGCTCCACTCCGCCGTCCCCGACACGGCTCGAGTCGCCAGGGCGCTGGAGACTTTGACGGGCGCTGTTTTCCAGCGCCCGCCGCTTATCTCCGCCGTTAAGCGGCAGCTTAGGATTAGGACTATTTATGAGAGTAAGTTGCTTGAGTATGATGCTGATAGGCATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGGACTTATGTTAGGACAATGTGTGTTCATTTGGGTTTGATTCTTGGTGTTGGTGGGCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATCATGGGGGAGAAGGATAACATGGTTACTATGCATGATGTCATGGACGCTCAGTGGGTTTATGATAATTATAGAGATGAGAGTTATTTGAGGAGGGTTGTTATGCCGCTCGAGGTGCTGCTGACTAGCTATAAGAGGCTTGTTGTTAAGGATTCGGCTGTTAATGCGATTTGCTATGGTGCCAAGCTGATGATTCCTGGTTTGTTGAGGTTCGAGAATGATATTGAGGTTGGGGAGGAGGTTGTGTTGATGACTACAAAGGGGGAGGCTATTGCGTTGGGGATTGCGGAGATGACAACTGCGGTGATGGCGACTTGTGATCATGGTGTGGTTGCGAAGATTAAGAGGGTGGTCATGGATCGGGATACTTACCCTAGGAAATGGGGGTTGGGGCCGAGGGCTTCGATGAAGAAGAAGTTGATTGCGGAGGGGAAGCTAGATAAGCATGGGAAGCCGAATGAGAAGACGCCACAGGAGTGGATGAGGAATTTGGTTTTGCAGACAGGTGGGGACAGTATAATTGCAGGAATGGCTGCTTCGGCTGAGGCTGATGGAGAGGGGAAAAAGAGGAAAGCTGAGGAGGCCGATGGTAGCCCTGCAGCTGTTACTGCTAAGAAGGCTAAAGTGGAGGAAGTTGAGAAGGTTGAGGTGGAAGAGAAGTTGAAGATTAAGAAGGTGAAGGAGGATGTTGTGGATATTGAGGTTGAGAAGAAGGAGAAGAAGAAAAAGAAGAAGAAGGATAAGGAGAATGCAGTGGCATCTTCTGATGAGGAGAAAGACAAATCTGAGAAAAAAAAGAAACACAAAGAAAAGGAAGAAGCTGCTTCACCGGAGAAAGACAAATCCGAGAAGAAGAAAAAGAAGAAGGACAAGCATGCTGAAGAAAATGGAAAGGAAGGTAGTGACGCTGACAGAAGCGAGAAGAAGAAGCATAAAAAGAAGAAAAATAAAGATGCGGATGAAGAATAG 1737 0.4968 MAELDHSLSEKKKKKNKKHTDDDTTTTTNTDTTVAAASDFMIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLADYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDTARVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKPNEKTPQEWMRNLVLQTGGDSIIAGMAASAEADGEGKKRKAEEADGSPAAVTAKKAKVEEVEKVEVEEKLKIKKVKEDVVDIEVEKKEKKKKKKKDKENAVASSDEEKDKSEKKKKHKEKEEAASPEKDKSEKKKKKKDKHAEENGKEGSDADRSEKKKHKKKKNKDADEE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153g00004 578 CDD PseudoU_synth_hDyskerin 92 274 - -
Stsc153g00004 578 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 11 527 IPR004802 GO:0006396
Stsc153g00004 578 CDD PUA_Cbf5 299 373 - -
Stsc153g00004 578 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 60 385 IPR004802 GO:0006396
Stsc153g00004 578 MobiDBLite consensus disorder prediction 488 578 - -
Stsc153g00004 578 SUPERFAMILY PUA domain-like 300 381 IPR015947 -
Stsc153g00004 578 MobiDBLite consensus disorder prediction 1 29 - -
Stsc153g00004 578 Pfam PUA domain 301 373 IPR002478 GO:0003723
Stsc153g00004 578 MobiDBLite consensus disorder prediction 436 467 - -
Stsc153g00004 578 SMART pua_5 301 375 IPR002478 GO:0003723
Stsc153g00004 578 Pfam tRNA pseudouridylate synthase B C-terminal domain 231 297 IPR032819 -
Stsc153g00004 578 FunFam H/ACA ribonucleoprotein complex subunit CBF5 86 292 - -
Stsc153g00004 578 Pfam TruB family pseudouridylate synthase (N terminal domain) 114 230 IPR002501 GO:0006396
Stsc153g00004 578 Gene3D Pseudouridine synthase 86 292 - -
Stsc153g00004 578 Pfam DKCLD (NUC011) domain 53 110 IPR012960 -
Stsc153g00004 578 ProSiteProfiles PUA domain profile. 300 375 - -
Stsc153g00004 578 MobiDBLite consensus disorder prediction 488 563 - -
Stsc153g00004 578 SUPERFAMILY Pseudouridine synthase 53 298 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc153g00004 578 Gene3D PUA domain 53 384 IPR036974 GO:0003723
Stsc153g00004 578 SMART DKCLD_2 52 110 IPR012960 -
Stsc153g00004 578 MobiDBLite consensus disorder prediction 1 25 - -
Stsc153g00004 578 Coils Coil 479 528 - -
Stsc153g00004 578 NCBIfam uncharacterized domain 2 296 372 IPR004521 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153g00004 Stsc-Chr153 35500 37236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153g00004 1 464 NAC Transcription Factor Family AT3G57150 81.435 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153g00004 K11131 - gmx:100806355 776.163