Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153g00001 ATGGAATCTGGTGATAGTAATAGTACTGTATCATCATTGATCATGATGGATGATGAAGATGTGCATCATCATCATAATCCCCATCATAATAATCATAATCATCAGTATTCTTCTTCAATCAACAAGGTTCATCATAGTGGTGGTGGTGGTCCCACAGCTACAAGTGTTCATGAGCTTCTTGAGTGTCCTGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCAACTTGTAAGACAAGGGTACATAACCGGTGTCCTACTTGTCGACAAGAACTCGGTGATATAAGGTGTCTTGCTTTGGAGAAGATTGCGGAATCACTAGAATTGCCTTGCAGATATAGCTCTCTTGGGTGTCCAGAGATATTTCCATATTACAGTAAACTCAAACATGAGTCTCTTTGTAACTTCAGACCTTACAACTGCCCCTACGCCGGATCAGATTGCTCCGTCGTCGGGGATATTCCATACCTTGTTGCTCATTTAAGGGATGACCATAGGGTTGATATGCATTCCGGATGCACTTTCAACCATCGCTATGTCAAGTCTAATCCGATGGAAGTCGAAAATGCTACGTGGATGCTGACTGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTCGAAGCCTTCCAGCTCGGTACGGCTCCTGTTTACATGGCATTCCTCCGTTTCATGGGCGACGAAAGAGATGCTCGGAGCTATAGCTACAGCTTGGAGGTAGGAGGAAACGGGCGTAAATTAACCTTCGAGGGAAGTCCAAGAAGCATAAGAGATAGCCACAAGAAAGTTAGAGATAGCCACGACGGCCTCATTGTTTACCGAAACATGGCGCTTTTCTTCTCCGGCGGGGACCGGAAAGAGTTGAAGCTGAGAGTAACCGGAAGGATATGGAAAGAACAGCAAAACCCGGAAAGCGGAGTGTGCATACCAAATCTGTGCAGCTAG 975 0.4523 MESGDSNSTVSSLIMMDDEDVHHHHNPHHNNHNHQYSSSINKVHHSGGGGPTATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSSLGCPEIFPYYSKLKHESLCNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMAFLRFMGDERDARSYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPESGVCIPNLCS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153g00001 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc153g00001 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 303 IPR008974 GO:0005515
Stsc153g00001 324 FunFam E3 ubiquitin-protein ligase SINAT3 112 170 - -
Stsc153g00001 324 SUPERFAMILY TRAF domain-like 115 307 - -
Stsc153g00001 324 CDD RING-HC_SIAHs 60 98 - -
Stsc153g00001 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 170 IPR013083 -
Stsc153g00001 324 CDD Sina 176 304 - -
Stsc153g00001 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Stsc153g00001 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 309 - -
Stsc153g00001 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 114 IPR013083 -
Stsc153g00001 324 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Stsc153g00001 324 SUPERFAMILY RING/U-box 52 101 - -
Stsc153g00001 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153g00001 Stsc-Chr153 17180 20736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153g00001 37 310 C3H Transcription Factor Family AT2G41980 76.277 1.14e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153g00001 K04506 - gmx:100782764 597.045