Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153920g00001 ATGATGGAGAACGTTAGCGTTATAGATTTGGGAGGTTTCGATCTCGACGAGGCTCTGGCTACGGTCACCGGAGATTCCCGGGTGGTGGTGATAGCAGCGGCATCGAAGAGCTTCGTGTCAAAGTTGCCGGCAGCAGAAGCAGATGACGTGAAAGAGGAGGATGTGTGCTCGGTATGCATGGAAGGTTTTGAAGGCGGAGGAAACAAGAGAGTCCCGTGCGGCCACGTGTACCACTCAGAATGCATCATTCTCTGGCTCTCCCGCTCCAACTCCTCTTGTCCTCTCTGCCGCCGCCATATCTTCCTCACTTAG 312 0.5449 MMENVSVIDLGGFDLDEALATVTGDSRVVVIAAASKSFVSKLPAAEADDVKEEDVCSVCMEGFEGGGNKRVPCGHVYHSECIILWLSRSNSSCPLCRRHIFLT 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153920g00001 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 101 IPR013083 -
Stsc153920g00001 103 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 33 99 - -
Stsc153920g00001 103 SUPERFAMILY RING/U-box 47 102 - -
Stsc153920g00001 103 SMART ring_2 56 96 IPR001841 -
Stsc153920g00001 103 Pfam Ring finger domain 55 97 IPR001841 -
Stsc153920g00001 103 SMART ringv_2 55 97 IPR011016 GO:0008270
Stsc153920g00001 103 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153920g00001 Stsc-Chr153920 3193 3644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153920g00001 55 97 C3H Transcription Factor Family AT3G60080 56.818 3.82e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153920g00001 - K22378 gmx:102669154 105.916