Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153787g00001 ATGAGTGGTGGTGATTACTACAAGGTGTTGAAGGTGAAGCGTGAAGCAAGAGAAGAAGAAGTGAAGAAAGCATACAAGAGATTAGCAATGAAATATCACCCAGACAAGAACAAGAACAAGGATCATCGCAAGAGAGAACATTCAGAAGCAAAATTCAAGAAGATATGTGAGGCCTATAATGTTTTGAGTGATCCAAAGAAGCGCCAGATCTATGATTTCTATGATCATTACCCTTTTAATAATAATCATAATTATTACTATGATTCTCATCATAATTTCATCAACAACCATGATTATAAGGAAGATGATGGTGATGATAATGTTTGGAACATGAAAGTGGAGAAAGGTGGTTTTGTTGAAGGAAGGTTGGGGTGTACCCTTGAGGATCTTTACAATGGTTGCACAAAGAAGGTTATGATCTCAAGAACTCTTGATCTTCAATTTCGGTCAACCTCTGTTGATGAAATCTTGAAGATTGATATCAAACCTGGTTGGAAGAAGGGCACAAAAATAACATTCCCAGGGAAAGGAAACCAAGAAGCCGGAACAGCTCTGGCCGATCTAGTCTTTGTGGTGGACGAGAAGCCGCACGCGATATTCAAAAGAGACCGACACGATTTGGTGGTCACAGAGAAGATACTACTTGTAGATGCTCTTGCTGGAAAGACTCTAAACTTGACAACTTTGGATGGAAGAGAACTCAAAATCAAAGTGACAGAGATTGTGAAACCGGGCTATGAACTCGTGGTACCCAATGAAGGCATGCCGATTTCAAAGGAACCTGGCAAGAAAGGGAACCTCATAATCAAGTTTGATGTTATGTTCCCTTCAAGGCTTACCACACAGCAGAAGAATGAGCTTAAGAGGATTCTCACTGATGCTTAA 885 0.4011 MSGGDYYKVLKVKREAREEEVKKAYKRLAMKYHPDKNKNKDHRKREHSEAKFKKICEAYNVLSDPKKRQIYDFYDHYPFNNNHNYYYDSHHNFINNHDYKEDDGDDNVWNMKVEKGGFVEGRLGCTLEDLYNGCTKKVMISRTLDLQFRSTSVDEILKIDIKPGWKKGTKITFPGKGNQEAGTALADLVFVVDEKPHAIFKRDRHDLVVTEKILLVDALAGKTLNLTTLDGRELKIKVTEIVKPGYELVVPNEGMPISKEPGKKGNLIIKFDVMFPSRLTTQQKNELKRILTDA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153787g00001 294 Gene3D - 197 277 - -
Stsc153787g00001 294 Gene3D - 119 195 - -
Stsc153787g00001 294 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Stsc153787g00001 294 CDD DnaJ 5 64 IPR001623 -
Stsc153787g00001 294 Gene3D DnaJ domain 3 118 IPR036869 -
Stsc153787g00001 294 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 291 - -
Stsc153787g00001 294 FunFam DNAJ heat shock family protein 196 291 - -
Stsc153787g00001 294 SUPERFAMILY HSP40/DnaJ peptide-binding domain 200 286 IPR008971 GO:0006457|GO:0051082
Stsc153787g00001 294 CDD DnaJ_C 119 279 - -
Stsc153787g00001 294 SMART dnaj_3 4 67 IPR001623 -
Stsc153787g00001 294 SUPERFAMILY Chaperone J-domain 4 91 IPR036869 -
Stsc153787g00001 294 Pfam DnaJ C terminal domain 121 276 IPR002939 -
Stsc153787g00001 294 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Stsc153787g00001 294 FunFam Dnaj homolog subfamily b member 115 195 - -
Stsc153787g00001 294 Pfam DnaJ domain 5 72 IPR001623 -
Stsc153787g00001 294 PRINTS DnaJ domain signature 7 25 IPR001623 -
Stsc153787g00001 294 PRINTS DnaJ domain signature 25 40 IPR001623 -
Stsc153787g00001 294 PRINTS DnaJ domain signature 47 67 IPR001623 -
Stsc153787g00001 294 PRINTS DnaJ domain signature 67 86 IPR001623 -
Stsc153787g00001 294 SUPERFAMILY HSP40/DnaJ peptide-binding domain 122 197 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153787g00001 Stsc-Chr153787 1389 3137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153787g00001 6 76 C2H2 Transcription Factor Family AT1G74250 37.179 8.00e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153787g00001 K09510 - gmx:100810718 355.525