Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153611g00001 ATGTCAGCTCTTCTCACCAACGATCTTAACGATCTTTCCATCAATCCCCAGATTCAGAGTGAAACAGGACTTGAATGTGAAGGGGAGATTCGTGGGGTGGAAGGTGGTGGTGGGAACCATGTTCATCGTGAGGGTCTTTGCGCCATTTGCTTGGACAATATTCCCCTTCAGGATACTGCTCTTGTAAAAGGTTGCGAGCATGCATACTGTGTGACGTGCATTCTTCGCTGGGCTACTTACAGAGAGAGAGTTACCTGCCCTCACATCCAGGACTACATGTTTGAGGAGAGTGTTTGTCTATTACTTAGGGCTTCATGGTTTCAACCTCTGAAGGTCGAAAAACACGTGGAGCATGAAGATGCCTTTGATCTGGTTGAAGAATTTTATCCATATCAATATGATTATGAGTACGACGAGGAGGAGGATGATGATGATCTAGATGAAGTTTACTATGGTAGCTCATCAAGTCTTCGTATTGGTAACCGGCGATGGGGAGACAACGGTTATGTCAGATCTGGGCGGCTCGAAGCAAGGCCAGTCCCTCGATCAAACTTCCATGATTCAGGAGGCGCAAGTTCATCATCTCGCGAGCCAAAGAAGAAAGAGGTAGCTGAAAAAGTTATGACAGGGAGACGGGCAAAGAGGGCTTTGAAGCGGGAGGCTGCTGATAAGGCTGCTGCAGCAAAGCATCAGCAACATCTGGTGAGGTTGGGCAGGAAGTGA 723 0.4772 MSALLTNDLNDLSINPQIQSETGLECEGEIRGVEGGGGNHVHREGLCAICLDNIPLQDTALVKGCEHAYCVTCILRWATYRERVTCPHIQDYMFEESVCLLLRASWFQPLKVEKHVEHEDAFDLVEEFYPYQYDYEYDEEEDDDDLDEVYYGSSSSLRIGNRRWGDNGYVRSGRLEARPVPRSNFHDSGGASSSSREPKKKEVAEKVMTGRRAKRALKREAADKAAAAKHQQHLVRLGRK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153611g00001 240 Pfam Ring finger domain 47 87 IPR001841 -
Stsc153611g00001 240 ProSiteProfiles Zinc finger RING-type profile. 47 87 IPR001841 -
Stsc153611g00001 240 MobiDBLite consensus disorder prediction 179 240 - -
Stsc153611g00001 240 SUPERFAMILY RING/U-box 40 87 - -
Stsc153611g00001 240 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 240 - -
Stsc153611g00001 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 121 IPR013083 -
Stsc153611g00001 240 SMART ring_2 47 89 IPR001841 -
Stsc153611g00001 240 MobiDBLite consensus disorder prediction 193 230 - -
Stsc153611g00001 240 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153611g00001 Stsc-Chr153611 2939 5116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153611g00001 34 240 C3H Transcription Factor Family AT5G19430 53.191 2.73e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153611g00001 - - gmx:100777135 257.684