Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153601g00003 ATGGAAAATGCCGGGCACTGGGAGCAGAACATACTCATCAACGAGCTAGTTCAGGGGATGGAGGTAGCAAGAAGGTTGAAGGCAGACCTGAATGCCCCATATCCAGCTGACACAACAGATTTATTGCTGCGGAGGATATTATCTTCGTATGAAAAAGCTTTGCTAATTCTAAGATGGAATGCATCGACTTCCAAGTCCCAGAACATGAGTCAAGCAACAACAGCAGCAACAGCAACCTTGTTACCAGAGTCACCAATATCTATCACCGCAAGTCCCCTGAGGGAGGACAGGGATCATAATCAAGAGTTCAAACACGATTCAAAGAAAAGAAAGACAATGGACAAATGGGTGGATCAAGTGAGAGTGAGCTTTGAGAGTGGCCTTGAAGGACCACATGAAGATGGCTACAACTGGAGAAAATATGGACAGAAAGATATCCTTGGTGCCAAATATCCCAGAAGTTATTATAGGTGCACCTTCCGGAACACTCAGGGGTGCTGGGCCACAAAGCAAGTACAGAGATCAGATGAAGATCCTACCATATTTGACATAACTTACAAAGGAAGGCATACCTGTTCTCAGGGAAACAAAGCTGTTCCTCAACCAAAATCGCCAGACAAACATGAGAAACTGCAATGTCATGGTAACGAAATTCAGCATAGACATACATCAGAAGAAAGCTTGACGACTTTTGGGACCATCATGACAGTTAAAAGAGATATGGTGGGAAATGGAGAAATGGAATATCCTTTCACTTTCCCTTCAACCTCATTTGGAAGCATGGCACAAGAAAGCCTCAGTTTGATTCCTTCAGCCCTGGAGAACGATTCATTCTTGAGCAGCCATTTCCAAACTCACTTATTATATCCCAACATGCAAGAATTCAAATACCTGCCATCTACGTCTTTCCAGATGAATGAGCTTGATGGGATCTATAATAGGCCACTCTCAGAATCAGATATTACTGAGATAATTTCCACCAACACATCCACCACCAATTCTCCAGTTCCGGAGTTCAATTTCTCACTTGATCCAGTGGATATTGATCCAAATTTCCCTATCAATACCCTGGATTTTTCTCCTAGAGAACTTAACAATAAGAACATGTAG 1110 0.427 MENAGHWEQNILINELVQGMEVARRLKADLNAPYPADTTDLLLRRILSSYEKALLILRWNASTSKSQNMSQATTAATATLLPESPISITASPLREDRDHNQEFKHDSKKRKTMDKWVDQVRVSFESGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYKGRHTCSQGNKAVPQPKSPDKHEKLQCHGNEIQHRHTSEESLTTFGTIMTVKRDMVGNGEMEYPFTFPSTSFGSMAQESLSLIPSALENDSFLSSHFQTHLLYPNMQEFKYLPSTSFQMNELDGIYNRPLSESDITEIISTNTSTTNSPVPEFNFSLDPVDIDPNFPINTLDFSPRELNNKNM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153601g00003 369 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc153601g00003 369 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc153601g00003 369 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 258 IPR044810 GO:0003700
Stsc153601g00003 369 FunFam WRKY transcription factor 53 118 195 - -
Stsc153601g00003 369 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc153601g00003 369 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc153601g00003 369 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153601g00003 Stsc-Chr153601 2834 4903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153601g00003 6 353 WRKY Transcription Factor Family AT4G11070 36.544 1.46e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc153601g00003 WRKY 8.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153601g00003 - - adu:107480050 671.003