Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153533g00001 ATGAGTCATATTAGCCCACTTGACCTGAATCGAAAACTGAAAGAGGTGAGATCCAGTAGACATGATGATGATGTGAAACTCAGTGCAACTATGACTGATTCAACAAAAGATCAGATGCCGAAAACTCAATCTGAACATGCGTTTTCAATGAAGGATCGCATGGGTTCGTCGATTCCTATGGATAATCACTATCGATCTTTTTTCACAAATACACATGATAAGAATACTACACAACCAGATTTTCGTTACTTAAAGCTTGATAAGGATTTGATGTCTAAAATTATGAAGAACGATCCTTCGATCATGGAAAAATTCTTTGAGAAAGTGGTGCTGCGGCCACCAGGAGAAGTAGGAAGTGGAATAAGGGTTGTCCATAGCTGTGACGCTAACAACAATGAACCAGTTAGAAACAACAGCGATGAGATCCATCACCACGATGATTCAAATATTGATTCTGTGAAGGTTGTTGATGCTGCTGATGATGGTGTAAAAGTTGTTGTTGCTGCTGTTGCTGCTGATGCTGATGGTGGAAAAGTTGTTGATGGTGATGATAACGGTGGTGATGAAGCAGGAATCAGGAGCCTTCCGTACAAGAAACACGGACCGTACACGTGTCCAAAGTGTATGGCAGTGTTCACAACATCACAAAAATTTGCGGCTCATACAAGTTCTCACTACAAGTATGAGACTAAGGATGAGAAACGGAAGAGAAAAAAGCTCAAAACGATGCGTAGAAACAAGAAAAAAACCAACGAAATTCAGCAACAGTTCATGGATAATGCAGCAGGAGGAGAAGGATCCACTACTTTGCACGAGGTGAAAGTGGAATATCAACCCCATGATCATAATAATGATGATGCTCCTCCTGGTTTTCCTGTTCCTTTGGGCGCTCGAAAGATCAAGATGGAGCCTTTCCCATAG 921 0.4137 MSHISPLDLNRKLKEVRSSRHDDDVKLSATMTDSTKDQMPKTQSEHAFSMKDRMGSSIPMDNHYRSFFTNTHDKNTTQPDFRYLKLDKDLMSKIMKNDPSIMEKFFEKVVLRPPGEVGSGIRVVHSCDANNNEPVRNNSDEIHHHDDSNIDSVKVVDAADDGVKVVVAAVAADADGGKVVDGDDNGGDEAGIRSLPYKKHGPYTCPKCMAVFTTSQKFAAHTSSHYKYETKDEKRKRKKLKTMRRNKKKTNEIQQQFMDNAAGGEGSTTLHEVKVEYQPHDHNNDDAPPGFPVPLGARKIKMEPFP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153533g00001 306 MobiDBLite consensus disorder prediction 8 30 - -
Stsc153533g00001 306 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Stsc153533g00001 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 230 IPR013087 -
Stsc153533g00001 306 MobiDBLite consensus disorder prediction 1 43 - -
Stsc153533g00001 306 MobiDBLite consensus disorder prediction 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153533g00001 Stsc-Chr153533 2703 3623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153533g00001 84 253 C2H2 Transcription Factor Family AT2G18490 30.601 3.00e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc153533g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153533g00001 - - ahf:112709584 175.637