Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153425g00002 ATGGTGATCATTTTTGGGAGGAGTAAATTTGGTCGCCTCAGCAGTCTTAGAAGAAGACAGGTGGTGACGTTCCAGGATATTCCAACTGAATTGAGTTATGATGGGGTCACCGCAACCGGAAATTTCAGCATCCGATATCTAATCTGCACAGGTGGCTTCGGATCAACTTATAAGGCAAAACTGTCTCCTGGTTTTCTTGTTGCCATAAAGCGGTTGTCAATAGGTAGATTTCAAGGAATTCAGCAGTTTGAAACAGAAATAAGGACATTAAGTAGAATTTGTTGGCACAAAAATCTTGTGACACTTATTGGGTATTACGTAGGAGAAACAAAAATGTTCTTAATTTACAACTACCTTACTAGCGGGAACCTTGAAGCCTTCATACATGATAGGTCAGGGAAAAAAGTGCAGTGGCCAGTTATTTACAAGATAGCGAATGACATAGCAGAGGCCCTCGCTTACCTTCATTATTCTTGTGTTCCCCGCATAGTTCACCGCGACATCAAGCCTATCAACATCTTACTGGATGAAGAACTTAATGCCTACCTGTCGGATTTCGGCTTGGCAAGATTGCTCGAGGTTTCTGAAACCCATGCCACCACTGATGTGGCAGGCACATTCGGTTATGTTGCTCCTGAATATGCCACCACCTGTAGGGTGTCGGACAAAGCAGATGTTTACAGCTTTGGTGTAGTGTTGTTAGAATTGATGTCCGGAAGAAAGTCACTCGATCCGTCATTTTCTCAATACGGGAATGGATTCAATATCGTACCATGGGCCGAGTTGTTGATGACCGAAGCAGCATCCAAGCTCGCCATCGATGAGAGCGACTCCCTTGCCGAAAACTACTGCGACATCACAAGCAAGGAGTTGCAACGTAGACTCGTGAAGATCCATATGCGAGGTGATGGTGGTGAAAATATGGAGAAGAAGGAGACAACTTTTTCAAATTTGTCTTTGCTGCATGCAAAGAAGAAGAAGCAGCTAGTAGCTAATATTTCTTAG 1005 0.4368 MVIIFGRSKFGRLSSLRRRQVVTFQDIPTELSYDGVTATGNFSIRYLICTGGFGSTYKAKLSPGFLVAIKRLSIGRFQGIQQFETEIRTLSRICWHKNLVTLIGYYVGETKMFLIYNYLTSGNLEAFIHDRSGKKVQWPVIYKIANDIAEALAYLHYSCVPRIVHRDIKPINILLDEELNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSQYGNGFNIVPWAELLMTEAASKLAIDESDSLAENYCDITSKELQRRLVKIHMRGDGGENMEKKETTFSNLSLLHAKKKKQLVANIS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153425g00002 334 Gene3D Phosphorylase Kinase; domain 1 7 118 - -
Stsc153425g00002 334 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 7 118 - -
Stsc153425g00002 334 SMART serkin_6 42 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153425g00002 334 Pfam Protein kinase domain 48 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153425g00002 334 SUPERFAMILY Protein kinase-like (PK-like) 27 248 IPR011009 -
Stsc153425g00002 334 ProSiteProfiles Protein kinase domain profile. 42 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153425g00002 334 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 278 - -
Stsc153425g00002 334 Gene3D Transferase(Phosphotransferase) domain 1 119 301 - -
Stsc153425g00002 334 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 119 298 - -
Stsc153425g00002 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153425g00002 Stsc-Chr153425 5200 7209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153425g00002 12 270 Receptor kinase-like Gene Family AT3G02130 65.000 2.24e-110 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Stsc153425g00002 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153425g00002 - - gmx:100795047 477.633