Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153418g00001 ATGGAAGAAGAGTTCGACATGCCCCAAGCTGAGGAGATGAACGAAGACTTTGATCTCCCCGACGAGAATCCCGTCCTGAAGGTTGGCGAGGAGAAGGAGATCGGAAACCAAGGCCTCAAGAAGAAGCTCCTCAAGGAAGGTCAAGGCTGGGATACCCCTGAAGTTGGTGATGAAGTTGAAGTTCACTACACGGGCACTTTGCTTGATGGAACCAAGTTCGATTCGAGCCGCGATAGGGATAGCACTTTTAAGTTCACTCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGCATTAAAACCATGAAAAAGGGGGAGAATGCTCTTTTCACCATCCCTCCTGCACTAGCTTATGGTGCATCTGGCTCGCCTCCAACTATTCCTCCAAATTCAACTCTCCAGTTTGATGTCGAGCTTTTGTCTTGGACTAGTGTGAAGGATATATGCAAGGATGGTGGTATATTTAAGAAAATAGTTAAAGAAGGGGAAGGATGGGAAAACCCCAAGGATCCTGATGAAGTATTAGCTAAGTATGAGGTTTCTCTGGAAGATGGAAAGGCTGTAGCAAAGTCCGATGGAGTGGAGTTCACTGTCAGAGAGGGTCACTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTTATTTTGACGGTGAAGCCACAATATGGATTTGGTGAGAAAGGGAAGCCAGCAGCTGGTGAGGAAGGAGCAGTTCCACCAAATGCAACACTGCAGATTACCCTAGAGTTAGTTTCATGGAAGACTGTGTCTGAGGTTACTGATGACAAGAAAGTAGTGAAGAAGATACTTAAAGAAGGGGAAGGATATGAGCGGCCAAATGAGGGGTCTGTCGTGCAAGTGAAACTGGTTGGTAAGCTGCAAGATGGGACTGTCTTCGTGAAAAAGGGCCATGAAGAGGAGCTATTTCAGTTTAGAACAGATGAAGAGCAAGTCATTGATGGGCTTGATAGAGGTGTAATGTCCATGAAGAAAGGTGAAGTGGCATTACTGACTATTGCACCTGAGTATGCTTTCGGTTCAGCTGAGTCCCAGCAAGAGTTGGCTGTCGTTCCTCCTAACTCAATTGTTTATCATGAGGTGGAGCTAGTTTCATTCGAGAAGGAGAAGGAGTCTTGGGATCTGAACACTCAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTATTATTTAAAGCTGGTAAATATGCAAAAGCTTCCAAAAGATATGATAAGGCAGTAAAGTATATAGAATACGATTCCTCCTTCAGCGCTGATGAGAAAAAACAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAAGAAGCAGAGAAATTGTGTACAAAGGTGCTGGAGGTTGAGAGTACCAATGTGAAAGCTCTTTACAGAAGGGCCCAGGCATATATGCAGTTGGCTGATTTGGATTTGGCTGAATTTGACATTAAGAAAGCTCTTGAGATTGATCCTGACAATAGGGAGGTAAAGCTGGAGTACAAGACTTTGAAGGAAAAGATAAAGGAGTATAACAAAAGGGAGCAGAAGTTTTATGGAAACATATTCAACAAGTTGACAAAGACTGCTTCTTGA 1653 0.4368 MEEEFDMPQAEEMNEDFDLPDENPVLKVGEEKEIGNQGLKKKLLKEGQGWDTPEVGDEVEVHYTGTLLDGTKFDSSRDRDSTFKFTLGQGQVIKGWDEGIKTMKKGENALFTIPPALAYGASGSPPTIPPNSTLQFDVELLSWTSVKDICKDGGIFKKIVKEGEGWENPKDPDEVLAKYEVSLEDGKAVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAAGEEGAVPPNATLQITLELVSWKTVSEVTDDKKVVKKILKEGEGYERPNEGSVVQVKLVGKLQDGTVFVKKGHEEELFQFRTDEEQVIDGLDRGVMSMKKGEVALLTIAPEYAFGSAESQQELAVVPPNSIVYHEVELVSFEKEKESWDLNTQEKIEAAGKKKEEGNVLFKAGKYAKASKRYDKAVKYIEYDSSFSADEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLEVESTNVKALYRRAQAYMQLADLDLAEFDIKKALEIDPDNREVKLEYKTLKEKIKEYNKREQKFYGNIFNKLTKTAS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153418g00001 550 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 380 IPR001179 GO:0003755
Stsc153418g00001 550 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 377 IPR001179 GO:0003755
Stsc153418g00001 550 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 258 IPR001179 GO:0003755
Stsc153418g00001 550 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 141 IPR001179 GO:0003755
Stsc153418g00001 550 SMART tpr_5 480 513 IPR019734 GO:0005515
Stsc153418g00001 550 SMART tpr_5 397 430 IPR019734 GO:0005515
Stsc153418g00001 550 SMART tpr_5 446 479 IPR019734 GO:0005515
Stsc153418g00001 550 Gene3D - 29 146 IPR046357 GO:0003755
Stsc153418g00001 550 SUPERFAMILY FKBP-like 33 157 - -
Stsc153418g00001 550 MobiDBLite consensus disorder prediction 20 40 - -
Stsc153418g00001 550 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Stsc153418g00001 550 FunFam Peptidylprolyl isomerase 29 147 - -
Stsc153418g00001 550 MobiDBLite consensus disorder prediction 1 19 - -
Stsc153418g00001 550 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Stsc153418g00001 550 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Stsc153418g00001 550 Gene3D - 147 261 IPR046357 GO:0003755
Stsc153418g00001 550 SUPERFAMILY FKBP-like 148 264 - -
Stsc153418g00001 550 Coils Coil 513 533 - -
Stsc153418g00001 550 Gene3D - 262 381 IPR046357 GO:0003755
Stsc153418g00001 550 SUPERFAMILY FKBP-like 266 397 - -
Stsc153418g00001 550 FunFam Peptidylprolyl isomerase 262 382 - -
Stsc153418g00001 550 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Stsc153418g00001 550 FunFam Peptidylprolyl isomerase 148 261 - -
Stsc153418g00001 550 FunFam Peptidylprolyl isomerase 385 540 - -
Stsc153418g00001 550 Pfam Tetratricopeptide repeat 480 513 IPR001440 GO:0005515
Stsc153418g00001 550 SUPERFAMILY TPR-like 386 544 IPR011990 GO:0005515
Stsc153418g00001 550 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 153 264 - -
Stsc153418g00001 550 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153418g00001 Stsc-Chr153418 550 5396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153418g00001 26 545 Calmodulin-binding Proteins AT3G25230 81.418 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153418g00001 K09571 - gmx:100812632 916.761