Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153402g00001 GAAAAAGTTATTGTTGTCTACAATAGACCATGTATTTTTCTTGAAGGAGCTGGTAGTTCCTCCACCATAATTCAATGGAATGACCATGACAAAATGAGTGCTAGTGCCACATTTACATCTTTAGCAAAAGATGTTGTTGCTAAAGGCATTACATTTAAGAAAAATGTCATCAACTTTACATTTGGAGCAAACGGTCCTAAATTAGATGGTGGTATAACTGCACAAAAGAGAATATCAGCCAACTCTCCAACAGGGTATGTATTTAAGGAATGTGACACAACAGGTGTTGCTGGAAAAGCTGAGCTTGGGAGAGCTTATGGACCATTTGCCAGAGTTATTATTGCTGATTCAAGTTTATCTGATGTAGTTCGACCTGAGGGTTGGAATGCTTGGAATTATGTTGGACATGAGTAA 414 0.3792 EKVIVVYNRPCIFLEGAGSSSTIIQWNDHDKMSASATFTSLAKDVVAKGITFKKNVINFTFGANGPKLDGGITAQKRISANSPTGYVFKECDTTGVAGKAELGRAYGPFARVIIADSSLSDVVRPEGWNAWNYVGHE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153402g00001 137 Gene3D - 1 59 IPR012334 -
Stsc153402g00001 137 SUPERFAMILY Pectin lyase-like 1 132 IPR011050 -
Stsc153402g00001 137 Gene3D - 60 137 IPR012334 -
Stsc153402g00001 137 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 67 136 - -
Stsc153402g00001 137 Pfam Pectinesterase 71 132 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153402g00001 Stsc-Chr153402 5242 7425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153402g00001 1 53 Carbohydrate Esterase AT2G19150 41.509 1.72e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153402g00001 - - ahf:112720961 141.739