Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153400g00002 ATGAATTTCAATAGCAGTAATTCATCATCATTTCCACCAAATTCTATGCAAATGCCTCGTTACCCTCTTCCTCATGACACCCAAGAAGATAAAGAGAAGCTGGCGTTGGAGCAATTTTGGTACCAACAGTTTATAGATATTCAAAGCAAAGAAGAAGCGACCCGACAGCAGTTGCTTCCGGTTAGGGTCAAGAAGATAATGAAAGCAGATCAGAGAAATAAGATAACAATAAATTCAGAAGCTCCATTGTTGTTGGCAAAAGCATGTGAAGTGTTGATTCAGGAACTGACATTTAGAGCATGGATTCGTGCTGAATCTAACAAGAGAAGATCCCTTCAACTGAGTGACATTGTCATGGCTATTAAGAAAGACAAACTCCTTAACAAGTTCTTCTCTGCTCTCGCTAATAATTGTGCCCATCATCACCATCACTTCCTTCATTCCAACCTTAATAAGGTTCTTATTTTCAACATCTTTGTTCTTCAATAG 489 0.3845 MNFNSSNSSSFPPNSMQMPRYPLPHDTQEDKEKLALEQFWYQQFIDIQSKEEATRQQLLPVRVKKIMKADQRNKITINSEAPLLLAKACEVLIQELTFRAWIRAESNKRRSLQLSDIVMAIKKDKLLNKFFSALANNCAHHHHHFLHSNLNKVLIFNIFVLQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153400g00002 162 Gene3D Histone, subunit A 21 147 IPR009072 GO:0046982
Stsc153400g00002 162 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
Stsc153400g00002 162 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 30 125 - -
Stsc153400g00002 162 MobiDBLite consensus disorder prediction 1 26 - -
Stsc153400g00002 162 MobiDBLite consensus disorder prediction 1 16 - -
Stsc153400g00002 162 Pfam Core histone H2A/H2B/H3/H4 19 123 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153400g00002 Stsc-Chr153400 6244 7798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153400g00002 36 128 CCAAT-HAP5 Transcription Factor Family AT1G56170 45.161 4.93e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc153400g00002 Histone 2.7e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153400g00002 - K08066 jre:108994406 95.5153