Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153205g00001 ATGGAAACACCAAACATTTTCCACAACAGCTTCTGCTCTCAATTCGCCTCCGACGGGGACGCCGGCGACAATAACAATAACACTGCTGCTGCTGGAAGCACCGGGGACAATTTCATTGTAGAGGATCTTCTTGACTTTTCCAATGATGACGGTATCATTGGAAGCAATAATAATGGTGGTGGTGGGGTTGTTGTCACGTTGGACTCGGCCCCCGGAAACTCTGTTTCGGGGGATTCTTCTAATGCTACAGTTGTTGAAAGCTGCAACTCCTCCTCCTTATCTTTCTCCGGCTGCGACACCGGTATCGTTGCCGATATTGGAAGCCGGAGTCTTGTTGATGGCAATTTCTCCGGCGAACTTTGCGTTCCGTATGATGATTTGGCAGAGTTGGAATGGCTTTCCAATTTTGTGGAGGAATCATTCTCAAGTGAGGACTTACAAAAGATGCAACTCATATCAGGCATGAAGAGACCCAACGATGATGCTTCATCGGAGGCCCACGAGTTCCCCTCAGAGCCCAACAGAAAAAGCCCAATATTCAACTCAGAAGTTTCAGTGCCAGCCAAGGCCCGTAGCAAGCGATCTCGCGTTCCGCCATGCAATTGGGCTTCCCGCCTTCATGTCCTCTCTCCAATTCCAACTCCAACGACGTCATCATCTTCAGAGCCTGACGTCAGCATGGTCCCTATCCCTGCTACGGTTTCCTTCACTATTCCGGTAACCAGAAAGAAGCCCGCGAAGACGACGGGCCGGAAGAAGGAAAATGGGGACGGCGGGTCTGGTGACGGTCGCAAGTGCTTGCATTGCGCAACAGACAAGACACCTCAGTGGCGTACTGGGCCCATGGGCCCAAAGACATTGTGCAATGCTTGTGGCGTGAGGTACAAGTCAGGGCGGCTTGTCCCGGAGTATAGGCCCGCGGCAAGCCCGACATTCGTGTTAACTAAGCATTCGAACTCGCACCGGAAAGTGTTGGAGTTGCGACGACAAAAGGAGATGATGCGAGCACAACACCACCACCACCACCAACCGTTCATACATCAACATCATCATCATCATCACCACCAGAACATGATGTTTGATGTGCCCACGAATGCTGATGATTACTTGATCCACCACCAACATGTTGGTCCCGATTTCAGGCAGTTGATTTAA 1155 0.51 METPNIFHNSFCSQFASDGDAGDNNNNTAAAGSTGDNFIVEDLLDFSNDDGIIGSNNNGGGGVVVTLDSAPGNSVSGDSSNATVVESCNSSSLSFSGCDTGIVADIGSRSLVDGNFSGELCVPYDDLAELEWLSNFVEESFSSEDLQKMQLISGMKRPNDDASSEAHEFPSEPNRKSPIFNSEVSVPAKARSKRSRVPPCNWASRLHVLSPIPTPTTSSSSEPDVSMVPIPATVSFTIPVTRKKPAKTTGRKKENGDGGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQHHHHHQPFIHQHHHHHHHQNMMFDVPTNADDYLIHHQHVGPDFRQLI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153205g00001 384 PANTHER GATA TRANSCRIPTION FACTOR 25 341 - -
Stsc153205g00001 384 MobiDBLite consensus disorder prediction 250 264 - -
Stsc153205g00001 384 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 262 324 - -
Stsc153205g00001 384 FunFam GATA transcription factor 257 343 - -
Stsc153205g00001 384 MobiDBLite consensus disorder prediction 242 264 - -
Stsc153205g00001 384 ProSiteProfiles GATA-type zinc finger domain profile. 260 296 IPR000679 GO:0006355|GO:0043565
Stsc153205g00001 384 CDD ZnF_GATA 265 312 IPR000679 GO:0006355|GO:0043565
Stsc153205g00001 384 ProSitePatterns GATA-type zinc finger domain. 266 291 IPR000679 GO:0006355|GO:0043565
Stsc153205g00001 384 SMART GATA_3 260 310 IPR000679 GO:0006355|GO:0043565
Stsc153205g00001 384 Pfam GATA zinc finger 266 299 IPR000679 GO:0006355|GO:0043565
Stsc153205g00001 384 MobiDBLite consensus disorder prediction 156 197 - -
Stsc153205g00001 384 PIRSF Txn_fac_GATA_plant 21 357 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc153205g00001 384 Gene3D - 259 310 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153205g00001 Stsc-Chr153205 781 3585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153205g00001 115 384 C2C2-Gata Transcription Factor Family AT5G25830 57.857 1.15e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc153205g00001 GATA 3.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153205g00001 - - zju:107420464 428.328