Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153191g00001 ATGAAACAGGATCATCATCATCAACAAGGGCAGTGTTCTTCTTCTTATTATTCTTCTTCTTCTTACCAACAGAATAATATGATGCATCAACAGAACATGATGATGAGTAGTGATGACATGATCTTTGGAGGAGGAGGAGGAAGAGATTTCATCAGCAACAACAACATGAACATGAACATGAACATGAACATGATGATGATGAACATGTTCCCTTCTTCTTCTGATCATCAAAACATGCAGCAACCATGGTCCATGCCATATGATTCTTCTTCTTCTACCTTTATTATGCCACCACCACCACCACAACCATATGCAAGCTTCTTCAACAGTAGTAGAAGGATGATTCATACATCATCATCAGCATCAGTAGGTGCCTTTGATCTGCAAGCTGAACTGAGCAAGATGAGTGCTCAGGAAATCATGGAGGCTAAAGCACTTGCTGCATCAAAAAGCCACAGTGAAGCTGAGAGGAGGCGTAGAGAGAGGATCAATAATCATCTTTCTAAGCTCAGAACCTTGTTGCCTAGCACTACCAAAACAGATAAAGCATCGTTGCTAGCAGAAGTGATTGAACATGTGAAGGAACTGAAACGCCAAACATCTCTCATTGCTGAAACCACTTCTCTTCCATCTGAATCCGACGAGCTCACCGTCCACGATGCTTCCGATGAAGATGGCAACTTCGTCATCAAAGCCTCTTTGTGCTGCCAAGATCGTTCTGATCTCTTGCCTCAACTCATCACCACCTTGAAATCAATGAACCTTAGAACCCTAAAAGCTGATATCACCACACTCGGTGGCCGGGTCAAGAACGTCTTGTTCATCACTTCTGATCAAGAAAACTATAATCATGATGATGATGATGATAATGGTTACCAATACTGCATTACTTCAATACAAGAAGCATTGAAGGCTGTTATGGAGAAAATTAATGGTGCTGATTCTGGTAATTCTGCAAGTGTTAAGAGACAAAGGACTAATAATAATATCATATCATCCATTTCTTAA 1008 0.4077 MKQDHHHQQGQCSSSYYSSSSYQQNNMMHQQNMMMSSDDMIFGGGGGRDFISNNNMNMNMNMNMMMMNMFPSSSDHQNMQQPWSMPYDSSSSTFIMPPPPPQPYASFFNSSRRMIHTSSSASVGAFDLQAELSKMSAQEIMEAKALAASKSHSEAERRRRERINNHLSKLRTLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETTSLPSESDELTVHDASDEDGNFVIKASLCCQDRSDLLPQLITTLKSMNLRTLKADITTLGGRVKNVLFITSDQENYNHDDDDDNGYQYCITSIQEALKAVMEKINGADSGNSASVKRQRTNNNIISSIS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153191g00001 335 CDD bHLH_AtAIG1_like 142 218 - -
Stsc153191g00001 335 PANTHER TRANSCRIPTION FACTOR BHLH30 58 331 IPR045847 GO:0003700|GO:0006355
Stsc153191g00001 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Stsc153191g00001 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 206 IPR036638 GO:0046983
Stsc153191g00001 335 CDD ACT_UUR-ACR-like 233 307 - -
Stsc153191g00001 335 Gene3D - 141 205 IPR036638 GO:0046983
Stsc153191g00001 335 Pfam Helix-loop-helix DNA-binding domain 150 196 IPR011598 GO:0046983
Stsc153191g00001 335 SMART finulus 153 202 IPR011598 GO:0046983
Stsc153191g00001 335 FunFam transcription factor bHLH30 142 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153191g00001 Stsc-Chr153191 821 3627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153191g00001 121 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 65.596 4.37e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc153191g00001 HLH 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153191g00001 - - jcu:105641974 287.345