Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153164g00001 ATGGGTGGGTTTGCCTTGGGTGGACGGAGGCTACAAAATGGGTTGGGTTCTCGACGACAGCAACTACAAAGATGGAGTTTCCATGGGAACCAAGTGCATACAATTTTTGTGGACAACCTTCCAATGATGGTTGCTAAGAGGGACTTATACATAGAATTTGGCAAGGATGGAAGTATCACTAATGTGTTCGTTTCAAGGAAACAGAGGACAAATCCATTTGCATTTGTCAGATTTGATACCTTTGGAAGAGCAAAGAAAGCCATTGAGAGAATGAACAGAACTACGTGGAGGG 292 0.4349 MGGFALGGRRLQNGLGSRRQQLQRWSFHGNQVHTIFVDNLPMMVAKRDLYIEFGKDGSITNVFVSRKQRTNPFAFVRFDTFGRAKKAIERMNRTTWR 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153164g00001 97 Gene3D - 27 97 IPR012677 -
Stsc153164g00001 97 SUPERFAMILY RNA-binding domain, RBD 20 96 IPR035979 GO:0003676
Stsc153164g00001 97 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 97 IPR000504 GO:0003723
Stsc153164g00001 97 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 95 IPR000504 GO:0003723
Stsc153164g00001 97 CDD RRM_SF 35 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153164g00001 Stsc-Chr153164 1171 1462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153164g00001 35 92 Eukaryotic Initiation Factors Gene Family AT1G22760 38.333 2.55e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153164g00001 K21123 - ahf:112794598 71.2478