Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153138g00001 ATGGATGATAATGATATCAAACCCCTTTTTCTCTCCCAAATCCCTCAAACTCCTAAAATTGAATCCTTAGATCACCATAGCCTTATTTTTCTCTCTCAAATCTCTCAAACACCTAAACTTGAATCCTTAGATCATCATAACCCCATTTTTCTCTCCCAAATCCCTCAAACTCCTAAACATGAATCCTTAGATCACCATAGCCTTGGGAGTTTTGCTACCCCACCTAGTGATTCTGCAAACTTAGCCACCAAAAATAATACAAACCAAACTGAAAACAAAAGAAAAACAACCTCTGATGTTGAGAGGTACATCCTTGTACCCCGTGTAAGCGCTAACAATGATGATAATCCTTTGCTAGGATTGAAAAAGCCTCGTGGCAGGCCACGTGGTTCGAAGAACAAGCCGAAGCCACCCATTTTCATAAGGGAGGCAAATGAACATGGCATGCGTCCGATCTTTATTCAGATGGCCCCAGGAGTTGATGTGATTCAGGCTTTAATTAACTTTGCCGTGAGTCGCCACATCGGAATATCGATTCTCAGTGCCTGTGGATCGATTTCCGAAGCGACAATTCACAACACACTATCTTTAAGCACTAACCCAATTGGCTTACTCATGAGAGGACCGTTTAATATGATGTCCCTATCAGGAACCTATTATGATGGTCATGTACAACCTGCATCTTCTTCCTTTTCGATTCTTCTTGGAGGAACATATGGCCAAGTTTTTGGTGGAATCATTACTGGGAAAGTTGTGGGGGCAGGAATTGTTAAAGTGATGGTTGCCTC 788 0.4201 MDDNDIKPLFLSQIPQTPKIESLDHHSLIFLSQISQTPKLESLDHHNPIFLSQIPQTPKHESLDHHSLGSFATPPSDSANLATKNNTNQTENKRKTTSDVERYILVPRVSANNDDNPLLGLKKPRGRPRGSKNKPKPPIFIREANEHGMRPIFIQMAPGVDVIQALINFAVSRHIGISILSACGSISEATIHNTLSLSTNPIGLLMRGPFNMMSLSGTYYDGHVQPASSSFSILLGGTYGQVFGGIITGKVVGAGIVKVMVAS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153138g00001 263 CDD DUF296 150 263 IPR005175 -
Stsc153138g00001 263 MobiDBLite consensus disorder prediction 114 139 - -
Stsc153138g00001 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 262 - -
Stsc153138g00001 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Stsc153138g00001 263 Gene3D - 146 263 - -
Stsc153138g00001 263 ProSiteProfiles PPC domain profile profile. 146 263 IPR005175 -
Stsc153138g00001 263 MobiDBLite consensus disorder prediction 69 93 - -
Stsc153138g00001 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 86 263 IPR014476 GO:0003680
Stsc153138g00001 263 MobiDBLite consensus disorder prediction 57 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153138g00001 Stsc-Chr153138 464 1251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153138g00001 109 263 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.125 1.54e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153138g00001 - - adu:107496595 266.159