Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153101g00001 ATGGGAGATGGTAGGAAAGTGTCGAAAAGTCGGCGCTCATCACCTTCAGTTGAGGAAGTTAATGGTGGAAGTAATAACATGAGAGGAGAAGGTTCTTTGAAAAAAGGCCCTTGGACATCGACAGAGGATGCAATTTTAATAGAGTATGTAAAGAAGCATGGAGAGGGGAATTGGAATGCTGTACAAAGACATTCGGGACTTGCTCGATGCGGTAAAAGCTGCCGATTAAGATGGGCAAATCATTTGAGACCAGATTTGAAAAAGGGAGCATTCACAGAAGAAGAAGAGTGGCGAATCATTGAGCTCCATGCTAAGATCGGAAATAAATGGGCACGAATGGCTGGAGAGCTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAACGATCTGGTCTACCAATCTACCCTCCTGACGTATGCTTGCGAGTGAAGCAAGGCAATCAAGAACATATAAACGTTGGTAGCTTGACAGACAGAGCCAACCTGCATGATGATCTTTCACAAACAGACACATTGGATATACCGGAGTTAGATTTCAAACACGTTAAGATCTGCCAGGCTCCATCTTATGGAATATCAATTTTTGATGTACCTGAAACAACTATGTTTCCTATGATGCATCGTACAAAGCGCCTTCGTGAATCAGAAATGCAATATGGCAGTTTGGATGGTTGTATCAGAAGTAGTAGTGTACCGGTTTTTGAACAGTGTGGTGATTACATGTGTGATAAAATTATCGACCATACTCGATTGTCTTCTCCATCTGGTCCTATTTTGAACACCAGTGATCAATTTCATGGTGATGACACATACGGTAGCCATGAAATTTTAAATGGAAATACTTCATCTTCTATGCCCACATCCGGAGCCATGAAGTTGGAGCTCCCTTCACTCCAATACCTAGAAACTCAACAAGGTATTTGGGACACACCTGTTTCCCCACTTCCTTCACTTGAGTCTGTTGACACATTGATTCAGTCTCCAGTACTTGATCTGGCTTCTTCGGATCCTATTTCTCCGCGAAGCAGCAATTTTCTAGAACCAATAATCTTCCAACCAAAGCATTCGAATACCAACTTACTGCAAGAAACACCTGATGATTGTGTTCCCAGTGAAGTAGCCAGGATTTCATCCATGAAGTGTAAGCCGGAATGGGATGAATCAGGGGAGCCATGTTCTCCCTTAGGTCAATCTTCTGCTTCGGTTTTAACCGACTATACTCCGGTTAGCATTATGTGCTCTGTGGATGGAGCCCAATCAGTTGAAACTATTCAAGGTTAG 1308 0.4251 MGDGRKVSKSRRSSPSVEEVNGGSNNMRGEGSLKKGPWTSTEDAILIEYVKKHGEGNWNAVQRHSGLARCGKSCRLRWANHLRPDLKKGAFTEEEEWRIIELHAKIGNKWARMAGELPGRTDNEIKNYWNTRIKRMQRSGLPIYPPDVCLRVKQGNQEHINVGSLTDRANLHDDLSQTDTLDIPELDFKHVKICQAPSYGISIFDVPETTMFPMMHRTKRLRESEMQYGSLDGCIRSSSVPVFEQCGDYMCDKIIDHTRLSSPSGPILNTSDQFHGDDTYGSHEILNGNTSSSMPTSGAMKLELPSLQYLETQQGIWDTPVSPLPSLESVDTLIQSPVLDLASSDPISPRSSNFLEPIIFQPKHSNTNLLQETPDDCVPSEVARISSMKCKPEWDESGEPCSPLGQSSASVLTDYTPVSIMCSVDGAQSVETIQG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153101g00001 435 MobiDBLite consensus disorder prediction 1 37 - -
Stsc153101g00001 435 FunFam MYB-related transcription factor 34 87 - -
Stsc153101g00001 435 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 21 421 - -
Stsc153101g00001 435 FunFam Transcription factor GAMYB 90 136 - -
Stsc153101g00001 435 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Stsc153101g00001 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Stsc153101g00001 435 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Stsc153101g00001 435 MobiDBLite consensus disorder prediction 14 28 - -
Stsc153101g00001 435 Gene3D - 34 87 - -
Stsc153101g00001 435 SMART sant 34 84 IPR001005 -
Stsc153101g00001 435 SMART sant 87 135 IPR001005 -
Stsc153101g00001 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Stsc153101g00001 435 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Stsc153101g00001 435 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Stsc153101g00001 435 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Stsc153101g00001 435 Gene3D - 90 161 - -
Stsc153101g00001 435 CDD SANT 37 82 IPR001005 -
Stsc153101g00001 435 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153101g00001 Stsc-Chr153101 4026 5926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153101g00001 17 360 MYB Transcription Factor Family AT2G26960 40.533 4.34e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc153101g00001 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153101g00001 K09422 - gmx:100800658 534.258