Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1530g00002 ATGCAACAATTCAATAAAGATCCTAAGACTGTTCTTGATAAACTTCATGCCAAATATGGTCCAATCTTTACTTTTCAAATGGGTTCTCATACTGACATTTACATTGCCAACCGATTCCTTGCTCACCAAGCATTGATACAAAATGGCAGCACCTTCGCTGACCGCCCTGTTGCTGTTCCTACCAAGAAAATCATTAGCAGCAATCAACATGACATCCTTTTTAGCTTCTACGGTCCTGTATGGCGTGCCCTCCGGCGAAACCTCACCTCAAAGATCCTTCACCCTTCACAGGTCAAGTCTTATGCAAATGCGCGCAAATGGGTGTTAGATATGCTTTTTGATCGGTTAAAATATGAATTGGGGGCAAGCAACCCCATAAGGGTCATTGATCATTTTCAATATAGCATGTTTTGCTTGCTCATTTTTATGTGTTTTGGTGACAAGCTTGATGAGAAGCAAATAAGGGAAATTGAGGATAGTTTACGCGGCATGCTCTTGAGCTTTATTAGGTACAATGTCTTGAATTTTTGGCTACCAATCACAAGGATATTGTTTTGGAAGAGATGGAAGGAATTCTTACAGCTAAGGAGAGACCTAGAAGCCGTGTTGGTTCCTTATATCGATGCTCGAAAGAAAGTCACGCAAGATAGACTTAGCAAGGATGGTGAAGAGGACAGTAACACAAATGAGTTTGTCTTGTGCTATGTGGATACTTTGTTGGATTTGCGACTGGTGGACGATGATGAAGGGAGCAAGCTTGATTATGGTGAAGGAGGAAGATTTGCAAAGTTGCCATATCTAAAAGCTTTGATCTTTGAGGGTCTAAGGCGCCATCCGCCACTACACTATGTGGCTCCTCATAGAGTAACCAAGGATGTAGTTCTGGATGGTTATTTGGTTCCTACCACTGCCTCTGTAAATTTCTTTGTGGCTGAGATAGGAAGGGACCCTACAGCTTGGGATGACCCTCTGGCCTTCAAGCCAGAGAGATTCATGGACAATGGAGGAACAACTTTTGATATAATGGGAAGTAAAGAGATAAAGATGATGCCATTTGGGGCAGGGAGGAGAATGTGCCCTGGATATGGTTTAGCAATTCTCCACTTGGAGTATTTTGTGGCCAATCTTTTTTGGAATTTTGAGTGGAAGGCTATGAGTGGGGATGACATTGATATGTCAGAGAAGCTGCTATTCACAACTGTGATGAAAAATCCCTTAAAGGTTTATATATTTCCTAGGCAATAA 1245 0.4193 MQQFNKDPKTVLDKLHAKYGPIFTFQMGSHTDIYIANRFLAHQALIQNGSTFADRPVAVPTKKIISSNQHDILFSFYGPVWRALRRNLTSKILHPSQVKSYANARKWVLDMLFDRLKYELGASNPIRVIDHFQYSMFCLLIFMCFGDKLDEKQIREIEDSLRGMLLSFIRYNVLNFWLPITRILFWKRWKEFLQLRRDLEAVLVPYIDARKKVTQDRLSKDGEEDSNTNEFVLCYVDTLLDLRLVDDDEGSKLDYGEGGRFAKLPYLKALIFEGLRRHPPLHYVAPHRVTKDVVLDGYLVPTTASVNFFVAEIGRDPTAWDDPLAFKPERFMDNGGTTFDIMGSKEIKMMPFGAGRRMCPGYGLAILHLEYFVANLFWNFEWKAMSGDDIDMSEKLLFTTVMKNPLKVYIFPRQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1530g00002 414 Gene3D Cytochrome P450 1 256 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 SUPERFAMILY Cytochrome P450 5 413 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 Pfam Cytochrome P450 3 237 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 Pfam Cytochrome P450 262 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 352 361 IPR017972 GO:0005506|GO:0016705
Stsc1530g00002 414 CDD CYP77_89 18 407 - -
Stsc1530g00002 414 PRINTS E-class P450 group I signature 135 153 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PRINTS E-class P450 group I signature 16 35 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PRINTS E-class P450 group I signature 359 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PRINTS E-class P450 group I signature 40 61 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PRINTS E-class P450 group I signature 268 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PRINTS E-class P450 group I signature 309 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PRINTS E-class P450 group I signature 349 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1530g00002 414 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 261 405 - -
Stsc1530g00002 414 Gene3D Cytochrome P450 257 414 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1530g00002 Stsc-Chr1530 7675 9077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1530g00002 12 414 Cytochrome P450 AT1G64950 49.119 2.70e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1530g00002 K24184 - gmx:100816275 592.808