Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153073g00001 ATGGACACTCACCCTTCGCCGGAGACCAGCTGCACCATCCACACCCGACCACAAATAACCGCCAAATACGAAATCCTCGATCGGCTTGGGTCGGGAGCATATGCTGACGTGTACCGTGGACGCCGTCTATCCGACGACGTAACGGTGGCGCTGAAGGAGGTCCACGACGCTCGATCGGCGCTCAGGGAAATCGAAGCTCTGAGGGTCCTTCAGGGCTCTGAAAACGTCGTCGTCATGCATGAGTTCTTCTGGAACGACGACGATGAACACGCCGTGATCGTGCTCGAGTTTTTCAGGACAGACCTCGCCGCCGTGATCGCGGAAGCTGGTTTTGATGTGGGTGAGGTGAAGAGGTGGATGACGCAGGTGCTTAGAGGCGTGGATGCTTGCCATAGGAACATGATCATCCATAGAGACTTGAAGCCTTCCAATTTCTTGGTTTCAGATCATGGAGTTCTCAAATTGGCCGATTTTGGACAGGCAAGGATAATTATGGAGCCTGGATTTGATTCTACAGAGGAGAACCCACCACCACCATATGAGCATGATTATGCTTCTTCAGTTGCGGAGAGCTCATCAATTGAACATCCTTCTTCAGAGGCTTTTCCTCATGACCAAGGAACCGTAAATCATGAAGAGTATTTCAGAGTTCTAGAAGAAATGAAAACCAAGAACACCATATATGACACTGATAAGGACACAAACATCCAAGATGGAAACACCTCTTGTCTTGCAACTTGCACAACAAGTAACACCGATGATGGCGATGATGATCTCTGGAAGGCTTCGTTGACGTTCGAAGCAGCAGAGGAGGAAGAAAGGAGGAATGAACTCGATTGTTGCCTCACATCACGTGTTGGAACTCGTTGGTATAAGGCTCCTGAATTGCTATGTGGATCCACAGATTATGGTCTAGGGGTTGATCTGTGGTCATTAGGGTGTATATTTGCGGAATTGCTAACCTTGAAGCCTTTGTTTCCTGGAACATCTGATGTAGATCAATTGAGTAGGATCATTAGTGTTTTGGGGAACATTGATGGAGAATCTTGGCCTGGTTGTTCTAGGCTTCCTGATTATGCAACAATGTCGTTTGGTAATGTGGAAAGGCCTATTGGTCTTGAAGAGTGCTTGAAGAATTGTAGAAAGGATCAAGTGTCTATGGTAAAGAAACTTGTTTGTTATGATCCAGCTAAGAGGGCCACAGCAATGGAGATCCTTCATGATAAGTTCTTTAGTGAAGAGCCTTGA 1248 0.4712 MDTHPSPETSCTIHTRPQITAKYEILDRLGSGAYADVYRGRRLSDDVTVALKEVHDARSALREIEALRVLQGSENVVVMHEFFWNDDDEHAVIVLEFFRTDLAAVIAEAGFDVGEVKRWMTQVLRGVDACHRNMIIHRDLKPSNFLVSDHGVLKLADFGQARIIMEPGFDSTEENPPPPYEHDYASSVAESSSIEHPSSEAFPHDQGTVNHEEYFRVLEEMKTKNTIYDTDKDTNIQDGNTSCLATCTTSNTDDGDDDLWKASLTFEAAEEEERRNELDCCLTSRVGTRWYKAPELLCGSTDYGLGVDLWSLGCIFAELLTLKPLFPGTSDVDQLSRIISVLGNIDGESWPGCSRLPDYATMSFGNVERPIGLEECLKNCRKDQVSMVKKLVCYDPAKRATAMEILHDKFFSEEP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153073g00001 415 Pfam Protein kinase domain 270 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153073g00001 415 Pfam Protein kinase domain 23 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153073g00001 415 Gene3D Transferase(Phosphotransferase) domain 1 204 415 - -
Stsc153073g00001 415 Gene3D Transferase(Phosphotransferase) domain 1 109 197 - -
Stsc153073g00001 415 PANTHER CELL DIVISION PROTEIN KINASE 22 414 - -
Stsc153073g00001 415 ProSiteProfiles Protein kinase domain profile. 23 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153073g00001 415 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Stsc153073g00001 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc153073g00001 415 Gene3D Phosphorylase Kinase; domain 1 14 108 - -
Stsc153073g00001 415 SUPERFAMILY Protein kinase-like (PK-like) 11 413 IPR011009 -
Stsc153073g00001 415 SMART serkin_6 23 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc153073g00001 415 FunFam Cyclin-dependent kinase F-1 14 109 - -
Stsc153073g00001 415 MobiDBLite consensus disorder prediction 186 205 - -
Stsc153073g00001 415 MobiDBLite consensus disorder prediction 168 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153073g00001 Stsc-Chr153073 1 1971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153073g00001 1 415 Core Cell Cycle Gene Families AT4G28980 55.452 3.69e-167 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Stsc153073g00001 Pkinase 1.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153073g00001 - - gmx:548056 548.51