Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153050g00001 ATGGAAGACAAATTCTCTAGCACCAATCAAGATTCCAAAGAAAGAATCTCATCAAGAAGAGCTCATCACAAGTCCAAAAACGGCAATGATGAGCGCAAGAAGATTCAAGAGAGTAGTGACAACAACAATGGCAGCGACGACAACGATGAGGGCAGAGGGAAGCATCATCACCCTACATACAGAGGTGTGAGAATGAGGTCATGGGGGAAATGGGTGTCTGAGATCCGGGAGCCAAGAAAGAAGTCAAGAATATGGCTGGGAACATATTCAACTGCTGAAATGGCGGCAAGAGCGCATGACGTGGCAGCATTAGCCATTAAAGGTCCTTCAGCTTATCTCAATTTCCCTGAATTGGCTCAACGTTACCCAAGGCCAGTCAGTACATCTCCCAAGGATATTCAGGCTGCTGCCGCAAAGGCCGCAGCCGTTGACACTCAACAAGAAGATAATAATCAAGGTCTAATAATTATGGAAAGTTCAAATTCAACTAATAATAATAATAGTGGCCAAGAATCTTCAAGTAATACTACTAGCATGGATGACGATGATGATGATGGCAAATTGTTTGACCTGTTACCAGATCTTTTCTCCGACGATGGAAAGAGTAATGGTTCATCTTCCTCATATTCTCCTTCCTTGAATTTATTTTCAGTTGATTATGGATTCCACCTTGAGGAGCACTTTTCGTGGGAGAATTATTAG 702 0.4274 MEDKFSSTNQDSKERISSRRAHHKSKNGNDERKKIQESSDNNNGSDDNDEGRGKHHHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDVAALAIKGPSAYLNFPELAQRYPRPVSTSPKDIQAAAAKAAAVDTQQEDNNQGLIIMESSNSTNNNNSGQESSSNTTSMDDDDDDGKLFDLLPDLFSDDGKSNGSSSSYSPSLNLFSVDYGFHLEEHFSWENY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153050g00001 233 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Stsc153050g00001 233 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Stsc153050g00001 233 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Stsc153050g00001 233 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Stsc153050g00001 233 MobiDBLite consensus disorder prediction 1 66 - -
Stsc153050g00001 233 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677
Stsc153050g00001 233 FunFam Ethylene-responsive transcription factor 2 59 117 - -
Stsc153050g00001 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 199 - -
Stsc153050g00001 233 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Stsc153050g00001 233 MobiDBLite consensus disorder prediction 1 56 - -
Stsc153050g00001 233 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Stsc153050g00001 233 MobiDBLite consensus disorder prediction 158 210 - -
Stsc153050g00001 233 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Stsc153050g00001 233 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153050g00001 Stsc-Chr153050 3711 4412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153050g00001 53 228 AP2-EREBP Transcription Factor Family AT2G44940 52.736 9.12e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc153050g00001 AP2 1.4e-13 CL0081