Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153039g00001 ATGCCAGAAAGCATGAGTATATCTGTGAATGGACAATCTCAAGTTCCACCTGGGTTCAGGTTCCATCCAACTGAGGAAGAACTCCTTCAATACTACTTAAGAAAGAAGGTCTCTTATGAGAAGATTGACCTTGATGTTATCCGAGATGTTGATCTCAACAAACTTGAACCATGGGACATACAAGAGAAGTGTAAGATAGGAACCACCCCACAAAATGATTGGTACTTTTTCAGCCACAAAGACAAGAAGTACCCAACTGGAACCCGGACAAATAGGGCGACTGCGGCCGGATTCTGGAAGGCCACCGGCCGCGACAAGGTGATATACAGCAACGGGAAGAGAATTGGGATGAGGAAGACGTTGGTATTCTACAAAGGAAGAGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGGCTTGATGACAACACCACCAACGATACCAATATTGTGTCAAATGTGATGGGAGATGCAGCACAAGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACCATCTTAAAACCCTAGATAGCCCTTTAACCTCTTCCATCTCCGGCGGCGACGGAGGTAGGAGGAGCCACCACCACCACCTGTTCGACTCATGCGATGAGGGCGCCTTAGAGCAAATCCTCCAACATATGGGACGAGGTGGTGGTGGTGGTTGCAAGGAAGAGAACAACTATGATCAATCCAACAACAACAATTATGGTGGATCATCATCTTCATCAACAAGGTATGAAAGAACCTTTGACACAATGAACGGAGGAGGCGGAGGAGGAGTTTACCATAACAATAATAATAATGATAGCAGGTTCTTGAAGCTTCCAAGCCTAGAGAGTCCAAAATCAACAAGCATGGATCATAATAATGATGATAGCCATGAAAATAATAATAATAATAATGGGTACCATCCTATTATCCCAGTTGAGATGGTAACTGAAAATGAGGGCTCATTCACATGTGAAAATCCCAACATGTTTCACCATCACCATTCATCAATGGTGAGTGGCGGCGGTGGCAACGACGGCGGCAGCGGACTTACCAATTGGGTAGCACTAGATAGGCTTGTTGCTTCTCAGCTTAATGGTCAGACCGAAGCTTCTAGGCAACTCTCTTGCTTCAATGACCCCACCATGGGGTATTCCACTGGTAATACCGATCTTTTCTTTTCAACCGTTAGATCTACATCATCGCTGTCTTCATCGTCAGCGTCCACGCATCCAAGGGCTGTTGTTAGTGCGGGTCCAGGTACATTCATTACTCCTGGAGCACAGGATTATACCACCACAAGCGAGATTGACCTGTGGAGCTTTGCAAGATCCACATCTTCGTTATTGTCATCCTCTGAGCCATTGTGCCACGTGTCCAACACGTCAGTGTAG 1401 0.4582 MPESMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTNDTNIVSNVMGDAAQEEGWVVCRIFKKKNHLKTLDSPLTSSISGGDGGRRSHHHHLFDSCDEGALEQILQHMGRGGGGGCKEENNYDQSNNNNYGGSSSSSTRYERTFDTMNGGGGGGVYHNNNNNDSRFLKLPSLESPKSTSMDHNNDDSHENNNNNNGYHPIIPVEMVTENEGSFTCENPNMFHHHHSSMVSGGGGNDGGSGLTNWVALDRLVASQLNGQTEASRQLSCFNDPTMGYSTGNTDLFFSTVRSTSSLSSSSASTHPRAVVSAGPGTFITPGAQDYTTTSEIDLWSFARSTSSLLSSSEPLCHVSNTSV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153039g00001 466 MobiDBLite consensus disorder prediction 222 307 - -
Stsc153039g00001 466 MobiDBLite consensus disorder prediction 184 203 - -
Stsc153039g00001 466 SUPERFAMILY NAC domain 10 175 IPR036093 GO:0003677|GO:0006355
Stsc153039g00001 466 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 288 - -
Stsc153039g00001 466 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Stsc153039g00001 466 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Stsc153039g00001 466 MobiDBLite consensus disorder prediction 265 290 - -
Stsc153039g00001 466 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Stsc153039g00001 466 FunFam NAC domain-containing protein 24 179 - -
Stsc153039g00001 466 MobiDBLite consensus disorder prediction 231 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153039g00001 Stsc-Chr153039 4025 6974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153039g00001 1 465 NAC Transcription Factor Family AT2G46770 50.638 7.94e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc153039g00001 NAM 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153039g00001 - - ahf:112734309 703.36