LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc153031g00002	ATGGCACGATCCTTACCACTTGATAAGCATAAGCTAGTAACCAATTTAAGGAATATGTTTGGTGAGGTTGTTGCTGTTACCGGTGATGGAATGAACGATGCTCCTGCTTTGCATGAATCAGACATTGGACTTGCTATGGGCATAGCTGGAACAGAGGTAGCCAAGAAAAATGCTGATGTGATTATAATGGATGACAATTTCACCACCATTGTCAATGTTGCTAAATGGGGAAGAGCGGTATACATAAACATTGTTGCTCTGGTTATCAATTTTGTTTCTGCATGTATCACAGGACTTATTTTTAAAGGTTGTTCTAATCACTCAATTCAAGTCGTTGATTCTTTTTTGTTTCTTTAA	357	0.3782	MARSLPLDKHKLVTNLRNMFGEVVAVTGDGMNDAPALHESDIGLAMGIAGTEVAKKNADVIIMDDNFTTIVNVAKWGRAVYINIVALVINFVSACITGLIFKGCSNHSIQVVDSFLFL	118

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc153031g00002	118	NCBIfam	HAD-IC family P-type ATPase	1	97	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Stsc153031g00002	118	SUPERFAMILY	HAD-like	2	98	IPR036412	-
	Stsc153031g00002	118	PRINTS	H+-transporting ATPase (proton pump) signature	27	43	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Stsc153031g00002	118	PRINTS	H+-transporting ATPase (proton pump) signature	59	84	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Stsc153031g00002	118	Gene3D	-	1	72	IPR023214	-
	Stsc153031g00002	118	PANTHER	CATION TRANSPORTING ATPASE	1	98	-	-
	Stsc153031g00002	118	Gene3D	-	73	97	-	-
	Stsc153031g00002	118	PRINTS	P-type cation-transporting ATPase superfamily signature	27	46	-	-
	Stsc153031g00002	118	PRINTS	P-type cation-transporting ATPase superfamily signature	51	63	-	-
	Stsc153031g00002	118	Pfam	haloacid dehalogenase-like hydrolase	15	69	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc153031g00002	Stsc-Chr153031	7669	8323	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc153031g00002	1	98	Primary Pumps ATPases	AT3G57330	80.909	3.97e-51	171

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc153031g00002	K01537		-	gmx:100785768	176.022