Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc153004g00003 ATGAGTACTGTGGGATACAGGTCAGATGATGAATGCTCTCATGTTGAGGGAAAGGGAGAACTTGGGTTTCTTGATTTCGAGGAAGAGAAATCTGTTTGTAGTTATGCCGCTATTGATGGCGATCCGGTTATCATATCCATCCCATTTCCATTTGTGAATGGGAAGCCTCAATCAGTGTTTCTTGGAGATACTGCTGTGGATTTAATAACCATTAATAATACTACCAAAGAGCCTGTGCAGCTGTGGGGTGTTCATATTTTTGCCTCAAATCCTCAGAACACTTTCACTCTTTCACTGATGGAACCTCCAACACCAAACTCGAATTCAAATGTGGATATAGTTGAAGGTTTTCTCGAATCATTCGATTTGGAGGATAGAATGCTTCAGCCTGGTGAGAACTTAAAAGTATGGTTGTCTTGCAAGACAAAAGAAATGGGCATGTACCAATCAATTGTGTATTTCGATGTTGGAGAAGAGAGAATAGAAAGGGTGGTTTTTCTCTTAGTTGAAGACAAGATCTCGAAGTCATTGGCTTCTAACAAGCCTTATTCTCGACAAAGAAGAAAAGACAAATTTGCAGTAGATAATTTTGTCCCAGGCTCACGTCCTGCAGGGAAAACAAATCGCGGATACATTAATAGGCTTCCAAAATATGATATTCCCAGGGATATTAGAAACTTGCTCGAGAATGATCAGATCCCTGAAGCCGTTGAAGGTGGTCTAACAAGAAGGAACTATGCTTCTTTTTTCAAAACATTGGTGATAATGGAAGAAATACAATTAGAGGAAGACATGAGGACTTATGACATGGAATCTGTAACAATGAAGAAGAGACCAAATCAATTTCTGTCCATGGTGGTTCCTGGGCTTGCTGAGAGAAGACCATCGCTGGTTCATGGGGATTTCATCTTTGCCAAACCAGCATCTGAAAATGATAAGAACCCTGGACGCCCTTATCAGGGATTTATCCATCGTGTTGAAGCTGATGAGATCTATTTGAAGTTTGATCATGAATTTCACATGTGCCATAGAGATGGAAATCTTTATGATGTTCACTTCACCTACAATAGGATCAATATGAGAAGGTTATACCAAGCAGTTGAGGCAGCCAATGGCTTAGGATCCGAGTTCCTTTTTCCATCCCCTTTAGCCAAGAAGAGGTTCATTAAAACCCCTGATCTGATTCCCCTATCCGGTACTTTTAATGAGCANNNNNNNNNNATTGGTTGCAAAGGGGCGCCACCTTATGTGATTTATGGGCCTCCAGGTACGGGAAAGACTAAGACAATAGTAGAAGCAGTCCTCCAGCTCTACAAACATAATAGGAATGCCCGTATCCTTGTCTGTGCACCGTCAAATAGTGCAGCAGACCATATTTTAGAGAAACTGCTTGATCAGAAGGGTGTTGAGTTCCAAGAAAATGAAATATTCAGGCTAAATGCTTCTACCAGGCCATATGAGGATGTCAAACCTGAAATCATTCGTTTCTGCTTCTTTGACGAGTTGATATTTAAGTGCCCGCCAGAGAGTGCCCTCAGGCATTATAGGATTATAATATCAACATATATGAGTGCCTCTCTTCTTTATGCAGAAGATGTTTCACGGGGTCATTTCTCTCACATTTTCTTGGATGAGGCAGGCCAAGCCTCAGAACCTGAAACCATGATCCCTATATCCCATCTCTGCCGAAGGGAGACTGTTGTTGTTGTAGCTGGAGACCCAATGCAGTTGGGTCCAGTAATCTATTCGAAAAAAGCAGAAACATATGGTTTGGGGAAATCATATCTGCAACGACTGTTTGAATGTGAGATGTATGGCACTGGAGATGATAATTATGCAAATACATTGATTAATAACTATCGATGCCAGCCGGAGATATTGCATCTTCCTTCAAAGCTGTTTTATAATGGGACATTGATTGCATGCAGAGATAGGACAACCTTCATGGTGAGTCCTGGCTTCCTCCCTAATAACGAGTTCCCTATTCTTTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAACCCCTCGTGGTTCAACCGAATTGAGGTGAGCAAAGTTGTCGAAGTTGTCAAGAGGCTGACAGCTGGTGGGAATATAACGGAGGAACACATTGGCATAATAACACCATATAGGCAACAAGTGCTCAAAATTAAACAGACTCTTGAAAATCAAGAGATGCCTGATATCAAAGTTGGTAGTGTTGAACAGTTTCAAGGACAAGAGAAGGAAGTTATTATCATATCAACTGTTCGATCAACCATCAAACACAATGAGTTTGATAGAGTCCATTGCCTTGGCTTTTTGAGCAATCATAAAAGGTTTAATGTGGCTGTAACTCGTGCTATATCGCTGTTGGTTATCATCGGGAATCCACACATAATCTGCAAGGACTATTATTGGAGCCAAATGCTGTGGTACTGCGTGGACAATTCGTCTTATCAGGGTTGTAAACTTCCTGATAGGCCAGAGCCTTATGTAGAGGACACTGGAGACAACAATGTGGAGCCTTATGGAGAGGTCAATGGAGAGTCCTATGGAGAGGTCAATGGAGAGCACTGTGTAGAATGGGGTCAAGATTTATCCCAGGTGGATATTCCCAAACCTGTTACTGATGAGGCTGAATGGTCTGATGGCTGGAACTCATAA 2655 0.4158 MSTVGYRSDDECSHVEGKGELGFLDFEEEKSVCSYAAIDGDPVIISIPFPFVNGKPQSVFLGDTAVDLITINNTTKEPVQLWGVHIFASNPQNTFTLSLMEPPTPNSNSNVDIVEGFLESFDLEDRMLQPGENLKVWLSCKTKEMGMYQSIVYFDVGEERIERVVFLLVEDKISKSLASNKPYSRQRRKDKFAVDNFVPGSRPAGKTNRGYINRLPKYDIPRDIRNLLENDQIPEAVEGGLTRRNYASFFKTLVIMEEIQLEEDMRTYDMESVTMKKRPNQFLSMVVPGLAERRPSLVHGDFIFAKPASENDKNPGRPYQGFIHRVEADEIYLKFDHEFHMCHRDGNLYDVHFTYNRINMRRLYQAVEAANGLGSEFLFPSPLAKKRFIKTPDLIPLSGTFNEXXXXIGCKGAPPYVIYGPPGTGKTKTIVEAVLQLYKHNRNARILVCAPSNSAADHILEKLLDQKGVEFQENEIFRLNASTRPYEDVKPEIIRFCFFDELIFKCPPESALRHYRIIISTYMSASLLYAEDVSRGHFSHIFLDEAGQASEPETMIPISHLCRRETVVVVAGDPMQLGPVIYSKKAETYGLGKSYLQRLFECEMYGTGDDNYANTLINNYRCQPEILHLPSKLFYNGTLIACRDRTTFMVSPGFLPNNEFPILFFGIQGCDEREGNNPSWFNRIEVSKVVEVVKRLTAGGNITEEHIGIITPYRQQVLKIKQTLENQEMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDRVHCLGFLSNHKRFNVAVTRAISLLVIIGNPHIICKDYYWSQMLWYCVDNSSYQGCKLPDRPEPYVEDTGDNNVEPYGEVNGESYGEVNGEHCVEWGQDLSQVDIPKPVTDEAEWSDGWNS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc153004g00003 884 Gene3D - 621 821 IPR027417 -
Stsc153004g00003 884 CDD SF1_C_Upf1 622 810 IPR047187 -
Stsc153004g00003 884 FunFam Probable RNA helicase SDE3 350 490 - -
Stsc153004g00003 884 PANTHER CANCER/TESTIS ANTIGEN 55 112 380 - -
Stsc153004g00003 884 FunFam Probable RNA helicase SDE3 621 819 - -
Stsc153004g00003 884 Pfam AAA domain 417 491 IPR041677 GO:0004386
Stsc153004g00003 884 Pfam AAA domain 510 584 IPR041677 GO:0004386
Stsc153004g00003 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 805 IPR027417 -
Stsc153004g00003 884 CDD DEXXQc_Helz-like 412 621 IPR026122 GO:0003723|GO:0032574
Stsc153004g00003 884 Gene3D - 401 606 IPR027417 -
Stsc153004g00003 884 Pfam AAA domain 592 794 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc153004g00003 Stsc-Chr153004 3367 7906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc153004g00003 417 552 Core DNA Replication Machinery Family AT1G08840 32.624 3.75e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc153004g00003 K18422 - gmx:100801796 1348.57