Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152g00017 ATGTCAGAGAACGATCAGAACCGCCTTCTGCGGCCTCCTCAAGATGCGGAGCGCGATGTGGAAGCTCAGGTATCGGAACGCTCCGTCGTCGTAAATGGAGGTGGTGGCAGCGGTGGCAAAGCAGGGTTCAAGGATTTTCTGAGGCTTTCGGGTAACCGACACAGTTTCAAGCGTCTTGAGAAAGATGTAGATAGAGATAGAGATAGAAGAGATCACCACAATCTTCATAATCATCACTCGCATTTGGATCTTCATGGTGATGAAGATGTCCTTGCCGACAGTGCGCCTCCAGAATGGGCTTTGCTTCTCATTGGTTGCCTCCTTGGCCTCGCCACCGGCCTCTTCGTTGCTGCTTTCAATACAGGGGTGCATCTAATACATGAATGGGCCTGGGCGGGTACACCAAATGAGGGTGCTGCTTGGCTTCGTTTGCAGAGACTAGCTGATACATGGCATCGGATCCTTTTGATACCTGTCTTTGGAGGAGTCATTGTTGGCATGATGCATGGTTTACTGGAAATACTGGACCAAATAAATCAGTCCACTTCCTCCCAAAGGCAAGGTTTTGATTTGCTCTCAGGAGTCTTTCCCACAATAAAGGCTCTCCAAGCTGCAGTCACTTTAGGTACTGGCTGTTCTCTGGGTCCTGAAGGTCCTAGTGTTGATATTGGAAAGTCATGTGCCAATGGATTCTCATTAATGATGGAAAATAACAGAGAAAGAAGAATAGCACTTATTGCAGCTGGTGCGGCAGCTGGAATTTCTTCAGGATTCAATGCTGCAGTTGCTGGTTGTTTCTTTGCTATTGAAACAGTGCTGAGGCCTCTTCGTGCAGAAAATTCTCCTCCATTTACAACTGCCATGATTATATTAGCTTCTGTTATCTCCTCCACTGTATCAAATGTTTTACTAGGAACCCACTCAGCTTTTACGGTGCCTGAATATGATTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTGTGTGGTGTTGTAAGTGTGGCCATGACTCGTTTGGTGGATTGGTTCACTGAATTGTTTGACATGATCCAGGAAAAGTTTGGCCTTCCTTTTGTGGTCTGCCCTGCTATAGGCGGTTTAGGAGCTGGGATCATTGCTCTAAAGTATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTCTCCATACTGGAACTAGTGCTTCAGCTCCTGGAATATGGCTCCTGACTCAATTGGCAGCTGCTAAGGTTATTGCAACAACTCTTTGCAAGGGCTCTGGGCTAGTAGGTGGTCTCTATGCGCCAAGTTTAATGATTGGTTCTGCAGTTGGTGCTGTATTTGGTGGTGTTGCGGCAGAAGTTATCAATTCAGCAATGCCTGGAAATACTGCTGTGGCCCAACCCCAGGCATATGCTCTTGTTGGAATGGCTGCTACGTTAGCATCTGTATGTTCTGTTCCTTTGACTTCAGTTCTACTGCTGTTTGAACTGACCAAAGATTATAGAATACTGCTTCCTCTCATGGGGGCTGTTGGATTAGCAATATGGGTTCCCTCAGTGACAAACGGGAAGAAGGAAATTGACAACAAATCTGATACAAGAAACTCACCAAAAGGATATTCTCCAGTTTCACCTGCTGATGATAATGAAGGTAACTGGGGACAGGCAAATGATGCTGATGGTTTAGAACTATCTGTTGTTGGCGATGCTGCTGATCATGAAGTAATTGACGAGGAATTTCATCTAGAAAATCTTAAGGTTTCTCAGGCCATGTCTGACAGCTATCTGAAGGTTTCATCATCTGCAACCCTGAAAGATGCAATCCAATGCATTCATGACGGCCACCAGAACTGTGTGCTAGTGGTCAATGAAGAAG 1876 0.4558 MSENDQNRLLRPPQDAERDVEAQVSERSVVVNGGGGSGGKAGFKDFLRLSGNRHSFKRLEKDVDRDRDRRDHHNLHNHHSHLDLHGDEDVLADSAPPEWALLLIGCLLGLATGLFVAAFNTGVHLIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVFGGVIVGMMHGLLEILDQINQSTSSQRQGFDLLSGVFPTIKALQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERRIALIAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGTHSAFTVPEYDLKSAAELPLYLILGMLCGVVSVAMTRLVDWFTELFDMIQEKFGLPFVVCPAIGGLGAGIIALKYPGILYWGFTNVEEILHTGTSASAPGIWLLTQLAAAKVIATTLCKGSGLVGGLYAPSLMIGSAVGAVFGGVAAEVINSAMPGNTAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNGKKEIDNKSDTRNSPKGYSPVSPADDNEGNWGQANDADGLELSVVGDAADHEVIDEEFHLENLKVSQAMSDSYLKVSSSATLKDAIQCIHDGHQNCVLVVNEE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152g00017 625 Pfam Voltage gated chloride channel 183 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc152g00017 625 Gene3D Clc chloride channel 89 536 - -
Stsc152g00017 625 MobiDBLite consensus disorder prediction 1 38 - -
Stsc152g00017 625 PRINTS Chloride channel signature 251 270 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc152g00017 625 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc152g00017 625 PRINTS Chloride channel signature 469 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc152g00017 625 PRINTS Chloride channel signature 487 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc152g00017 625 PRINTS Chloride channel signature 428 448 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc152g00017 625 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 18 625 - -
Stsc152g00017 625 MobiDBLite consensus disorder prediction 526 557 - -
Stsc152g00017 625 CDD Voltage_gated_ClC 111 514 - -
Stsc152g00017 625 MobiDBLite consensus disorder prediction 10 24 - -
Stsc152g00017 625 FunFam Chloride channel protein 89 533 - -
Stsc152g00017 625 MobiDBLite consensus disorder prediction 60 79 - -
Stsc152g00017 625 SUPERFAMILY Clc chloride channel 96 524 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152g00017 Stsc-Chr152 85379 89408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152g00017 170 551 Ion Channels AT5G40890 22.312 9.75e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152g00017 K03281 - qsa:O6P43_013428 876.315