Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152g00011 ATGACAAGTTGTTCAGGTCCCAATTTGTGGGGCGAGCAAGAGAGTGAGAGTGAGAAACACACACCAAATGGAAATGGGAAATCCTCCGCCGCCGCCGCTAAAACTTATCCACCGCCAACAGCTCTCTACCACGACCTTGCTTCTGATCCCAACCTCTTCCGGGATAACCTTGAATCTTTCCATAAATCATTCGGCACTAAATTTAAGGTTCCCACCATCGGAGGAAAGCCACTAGATTTATATCGCCTTTTCATGGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTAATTGTAGAACGCAAATGGAAGGATGTGATTGTGGGCTTCAAGTTTCGAGAGACTATTACAAGCGCATCATTTATGGTGCGCAGATACTATCTATCATTGCTTTATCACTTTGAGCAGGCATATTACTTTCGGAAGCAAGTCCCTCCTTCCTCAACACCTGATTCTGCAAATATCAGTCTTGTTGATAGCTCCACAACCTTCGGTGAAGCCAGTACAGCCCAGCAGCTTGGTTCTGTGGTTCCTGGAACAATTGATGGGAAGTTTGATGGTGGCTATATAGTTACAGTGGATCTGGGTTCTGAACAAGTGAAAGGTATTTTGTACCATGTTCCCATCAGTTTGTCCCAGAGCTCTAATACTGTTGGCATCCATGGTTCACGGAATCCAAAGNNNNNNNNNNAACATGATCCATCTCGGCCAAAGTCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAGAACTATGCCAGGTTGAGACCCTTATTCCATGGTCAAGAGAGAGCGATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTAACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGCTGAGAGATAAGGAGAGGTACAAGACTGAAATGTTGGAGTACAAGTCATCTAATAATTCAGCTCCTTAA 933 0.4373 MTSCSGPNLWGEQESESEKHTPNGNGKSSAAAAKTYPPPTALYHDLASDPNLFRDNLESFHKSFGTKFKVPTIGGKPLDLYRLFMEVTSRGGLEKVIVERKWKDVIVGFKFRETITSASFMVRRYYLSLLYHFEQAYYFRKQVPPSSTPDSANISLVDSSTTFGEASTAQQLGSVVPGTIDGKFDGGYIVTVDLGSEQVKGILYHVPISLSQSSNTVGIHGSRNPKXXXXHDPSRPKSNRSGYNFFFAENYARLRPLFHGQERAISKRIGFLWNNLTEAERQVYQEKGLRDKERYKTEMLEYKSSNNSAP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152g00011 310 CDD HMG-box_AtHMGB9-like 236 302 - -
Stsc152g00011 310 Gene3D High mobility group box domain 222 309 IPR036910 -
Stsc152g00011 310 Gene3D - 43 151 IPR036431 GO:0003677
Stsc152g00011 310 SUPERFAMILY ARID-like 45 148 IPR036431 GO:0003677
Stsc152g00011 310 SMART bright_3 48 139 IPR001606 GO:0003677
Stsc152g00011 310 SMART hmgende2 235 304 IPR009071 -
Stsc152g00011 310 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 308 - -
Stsc152g00011 310 SMART ARID_2 44 134 - -
Stsc152g00011 310 MobiDBLite consensus disorder prediction 1 36 - -
Stsc152g00011 310 CDD ARID_HMGB9-like 49 134 IPR045303 GO:0003677
Stsc152g00011 310 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 236 303 IPR009071 -
Stsc152g00011 310 MobiDBLite consensus disorder prediction 215 241 - -
Stsc152g00011 310 SUPERFAMILY HMG-box 233 305 IPR036910 -
Stsc152g00011 310 Pfam ARID/BRIGHT DNA binding domain 52 134 IPR001606 GO:0003677
Stsc152g00011 310 ProSiteProfiles ARID domain profile. 47 138 IPR001606 GO:0003677
Stsc152g00011 310 Pfam HMG (high mobility group) box 236 303 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152g00011 Stsc-Chr152 42259 44653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152g00011 41 309 ARID Transcription Factor Family AT3G13350 50.360 4.84e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc152g00011 ARID 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152g00011 - - adu:107491521 515.383