Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152g00009 ATGTCGATGGTGCTGAGGAGGGTGTGGGAACTGGTGTCGAGATCCAACGCTGATGGAAGCTCATCAGAAGAGCTGTCACAGTCATCATCATCGTGTTCGTCCGATATGGGTGAGCTGGAGAAGCTGCCAGGAGACATAGTGATACAAATAATTCGAGTGTTGGGGCCAAAGGAAGCTGCCAAATTGTGCTGCGTATGCAAGACTCTCAGATGCCTCCTTCTCGACAACCGTTTGTGGATTCACTTCCTTCAGACCTACCAGTCCCACCCTTCTTGGGACTCTCTCTTCTTCGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCTCTTCCACCCTTCCATGCCTACAGGCACCAACTCTCCTTTAAGCATATTTATGGCCAACGAGCACGCGTTCCTGGTTCTGTTATCATTGATGGCGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAATATGCCTCTCCATCGGGCCGCTCAGCAACCTTTTTGGAATTCGGTAACATAGAGTCCCCAATGTATACTAGACTACGCCATTTTTTTGCAACTATATATAACAGGATGCAGGTCAAACCAAATACACAACCTGTTATTGTTTCTGTACCAATATGTCATTATGATGATACTAAATCAGCCAAAGCATCAAGACGCCAGCTTAAGGAAGCAATCTATTCTGCCCTCTTCGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTTTGCTGCAAAGCGTACTTCTGGAATAGCTGTTAATATAGGGTTTCAAGTCACATCAGTAGTTCCAATTTTTAATGGTAAAGTGATGCGCAGTGTGGGCGTGGAAGTTGTGGGACTGGGAGCACTAAAACTCACAGGATTTCTGAGGGAGAAGATGCGACTCAACAACCTAAATTTTCAGTCTTTATACACTGTCCGAACATTGAAAGAGAAGCTGTGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGCAGTTGGAGAAGGACGGTTTACCCTTTCAAAAGAGCGGTTTCAAACTGGAGAGATCTTATTCCAGCCGCATCTTGCTGGAGTACAAGCGATGGGTTTGCACCAGGCCATAGCTCTTTGCATGGAGCATTGCCATTCTGGGGAATTAGCAGGTGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGTTCTGCATGCTTACCAGGTTTGGCAGAAAGGTTAGAGAAGGAACTCAAGGCCTTACTTCCTCCATACATATCCAATGGAACCAGAGTCATACCTCCTCCATACGGTGCCGATACTCCTTGGTTTGGAGCTAAGATTATTGGCAATCTGAGCACATTTCCTGGTCCATGGTGCGTGACAAAGAAGCAGTTCCGTCAGAAGCCAAGACTCAACCTCATTTGGTGA 1422 0.462 MSMVLRRVWELVSRSNADGSSSEELSQSSSSCSSDMGELEKLPGDIVIQIIRVLGPKEAAKLCCVCKTLRCLLLDNRLWIHFLQTYQSHPSWDSLFFAETTLSYGYPLPLPPFHAYRHQLSFKHIYGQRARVPGSVIIDGGSGYCKFGWSKYASPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNTQPVIVSVPICHYDDTKSAKASRRQLKEAIYSALFDMNVPAVCAVNQATLALFAAKRTSGIAVNIGFQVTSVVPIFNGKVMRSVGVEVVGLGALKLTGFLREKMRLNNLNFQSLYTVRTLKEKLCYVALDYEAELSKDTQASFEAVGEGRFTLSKERFQTGEILFQPHLAGVQAMGLHQAIALCMEHCHSGELAGDSDWYKTVVLSGGSACLPGLAERLEKELKALLPPYISNGTRVIPPPYGADTPWFGAKIIGNLSTFPGPWCVTKKQFRQKPRLNLIW 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152g00009 473 SMART actin_3 133 463 IPR004000 -
Stsc152g00009 473 Gene3D - 175 465 - -
Stsc152g00009 473 Gene3D - 24 106 - -
Stsc152g00009 473 MobiDBLite consensus disorder prediction 18 37 - -
Stsc152g00009 473 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Stsc152g00009 473 Pfam Actin 182 463 IPR004000 -
Stsc152g00009 473 SUPERFAMILY F-box domain 35 98 IPR036047 GO:0005515
Stsc152g00009 473 MobiDBLite consensus disorder prediction 18 36 - -
Stsc152g00009 473 CDD NBD_sugar-kinase_HSP70_actin 136 286 - -
Stsc152g00009 473 Gene3D Actin; Chain A, domain 4 283 366 - -
Stsc152g00009 473 PANTHER ACTIN 177 465 IPR004000 -
Stsc152g00009 473 SUPERFAMILY Actin-like ATPase domain 249 464 IPR043129 -
Stsc152g00009 473 SMART fbox_2 42 82 IPR001810 GO:0005515
Stsc152g00009 473 SUPERFAMILY Actin-like ATPase domain 135 255 IPR043129 -
Stsc152g00009 473 Gene3D - 240 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152g00009 Stsc-Chr152 34384 38054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152g00009 182 469 Cytoskeleton Gene Families AT3G12110 31.650 4.75e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152g00009 K16616 - gmx:100791973 783.097