Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152996g00004 ATGGATTTGGAAGATGGACCGGAAACTGATAATGGAAGTTCTGCTGAAAAAACAGCAGGACCGTGTGTGGGCGCTTCGATTTTGGAACCTTATATTGGTATGGAATTCGATTCTGAAGGTGAAGCCAAGAACTTTTATGATGACTATGCAAGACAGGAAGGGTTCATTGTGCGCATGGATAAATGCCATCGTTCTGAAATTGACAACAGAATCATTTCTCGTCGTCTTACTTGCAATAAGGAAGGTTTTCATGTGAGAGGGAAAAATCATAAACTCAACCCTTATCGGAAACCCCGGGTTAGCATAAGAGAAGGCTGTGAGGCAATGATGATCGTCAAAGTTAATAAATGTGGGAAGTGGGTTGTTACTAAATTTGTTAAAGAACATAGTCATCCACTGATGGGTTCTGGTGTTCGTTCTTATGGTACAACAGAATCGAAGGATAAGAGGATTCGACAACTCACAAAGGAACTCGAGCGTCGAGATCAGCAATGTCAGAAATATCGCAAGCTGATACTTTCCCTTCTGGAAACTGTTGAGGAGCAAAATAAATTCTTATCAACCGAAGTTGAACATGTTGTTAAGAGTGTAAAACAACTTGAGAATGATGTGCAAAAACCTTTTGACACTAGCTAG 636 0.4041 MDLEDGPETDNGSSAEKTAGPCVGASILEPYIGMEFDSEGEAKNFYDDYARQEGFIVRMDKCHRSEIDNRIISRRLTCNKEGFHVRGKNHKLNPYRKPRVSIREGCEAMMIVKVNKCGKWVVTKFVKEHSHPLMGSGVRSYGTTESKDKRIRQLTKELERRDQQCQKYRKLILSLLETVEEQNKFLSTEVEHVVKSVKQLENDVQKPFDTS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152996g00004 211 Coils Coil 151 171 - -
Stsc152996g00004 211 MobiDBLite consensus disorder prediction 1 20 - -
Stsc152996g00004 211 Pfam FAR1 DNA-binding domain 44 134 IPR004330 -
Stsc152996g00004 211 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152996g00004 Stsc-Chr152996 8080 10464 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc152996g00004 FAR1 4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152996g00004 - - pvu:PHAVU_010G032600g 255.758