Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152983g00001 ATGCCAACAGTTCCCGCAAGTGTCCCACGATGGCTCAAAAACGCCACCCCTCAGAATGTAAAAAATAGGGAGGCTTCCACATATACCTCACCTGATTTTCACACTGAAATATCCATAGGTGACTCTAATCAACGCAATACTCCATTTTCAACAAAAAGATATCCAAGACCCAAATTTATCGTATCAGTTATTGATGGGGTTTATGTTGTCCAGAAACCTGTTAGGGATTATCACCTAGAACAATTTGCAATGAATGTTCCAAAGCAACTTCTAGAAGTGGCATTCCCTCATAAACCAAAACATATCACGGTCATTGATGGCAATTCAAGGTTATTTCATATTCGCCTTCGAACCAAACACAACAATCGCACAACGTCAGTCCTCGTAAAAGGTTGGAAAGAATACCAGTTGGCCAATAAATTGAAGAAAGGGGATGTGATTACGATGTCATTTAATCCAAACTATCCAGACCAACTCAACTGTGTTGTTGCTAAAGAAGATTAG 504 0.3968 MPTVPASVPRWLKNATPQNVKNREASTYTSPDFHTEISIGDSNQRNTPFSTKRYPRPKFIVSVIDGVYVVQKPVRDYHLEQFAMNVPKQLLEVAFPHKPKHITVIDGNSRLFHIRLRTKHNNRTTSVLVKGWKEYQLANKLKKGDVITMSFNPNYPDQLNCVVAKED 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152983g00001 167 Gene3D - 16 163 IPR015300 -
Stsc152983g00001 167 Pfam B3 DNA binding domain 76 152 IPR003340 GO:0003677
Stsc152983g00001 167 CDD B3_DNA 81 151 IPR003340 GO:0003677
Stsc152983g00001 167 MobiDBLite consensus disorder prediction 12 51 - -
Stsc152983g00001 167 SUPERFAMILY DNA-binding pseudobarrel domain 68 154 IPR015300 -
Stsc152983g00001 167 ProSiteProfiles B3 DNA-binding domain profile. 69 167 IPR003340 GO:0003677
Stsc152983g00001 167 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152983g00001 Stsc-Chr152983 1883 2516 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152983g00001 B3 5.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152983g00001 - K11367 psat:127080863 41.2022