Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152970g00002 ATGCTTCCTTTCACTTTCATCCTCACCACCTTCCTCCTCTTATTCATTTACTCACAACCAAGTCTCTCACTAAACCAAGAAGGCCTCCTTCTACTCCAATTCAAGAACCACCTAACTGACCGTAACAATGCACTCTCTTCATGGAACCCTTCCGACACAACACCCTGCCATTGGTTGGGTGTCACGTGCCGCAGCACCACCAAAACTCCAGTAACCGTAACCGTCACCGCTCTCAACCTTTCCTCCGTCGCTCTCATCGGCCCACTCCCAGCCATCCCTCTCTGCCGCCTCCCCGCCCTCACCACCCTCTCCATCCCCGACAGCTACATCTCCGATACCATTCCCCAATCCCTCTCCGCCTGCCGCCGTCTCCGCCACCTCGACCTCTCCCAAAACACCCTCGTCGGAACCATCCCACCCTCCCTCTCCCTCCTCACCGACCTCCGCCACCTCGACCTCTCCTTCAACAACCTCTCCGGCGACATTCCCGCCCAACTCAGCCACCTTCGCTGCCTCGAGTACCTTGACTTAGTGAGCAACTTCCTCGACGGACCATTCCCGAACTCGTTAACCAACGTGACGTCACTCAAGTACCTTCGCTTAGCATACAACCTCTTCGCGCCGAGTCAGCTCCCGAGTCAACTCGGCCAACTCGCCAACCTCAAAGTTCTCTGGCTCTCCAGTTGCAACCTCATAGGTCCAATCCCTAACTCCATCGGGAACCTCACGTGCCTCGAGAATCTCGACCTCTCCAAGAACAAGCTCACCGGAGAGATACCGGAATCGATAACAGGGTTGAATAGCGTACTCCAGATTGAGCTATACGAAAATGCGCTCACCGGCGCGTTGCCGAGGGGGTTGGGGAACCTAACGCGCCTCCGCCAATTCGACGCGTCGGACAACAAATTGACCGGAACGATCCCCGAGGAGCTGTGCGAATTGCCACTCGATTCTCTTAATTTGTACAACAACAGTCTAGAAGGTTCGTTGCCGGCGAGCATTGCGCGTTCTCCGAACCTCCATGAGCTCAAATTATTCAGAAACGAACTCGTTGGAAGCTTGCAGAGTGAACTCGGTAGTAACTCGCAGCTACAGATTCTTGATGTCTCGTTTAACCGTTTTTCCGGCGAGTTGCCGGCGAGTTTGTGCCGGTGGGGAAAGTTGGAGGAGTTGCTCATGTTGTCGAATTCTTTTTCCGGTAAAATTCCAGAGAGCCTCGGAAACTGCACGAGCCTAAGGAGGGTTAGGATTGGGAACAATAACTTGTCTGGAAAGGTACCTGATGCATTTTGGGGTTTGCCTCATTTGCATTTACTTGAGCTTAATTCTAATTCGTTTTCTGGTTCGATTTCAAATTTGATATCCTTTGCTTATAATCTGTCGGATTTGAGAATCTCGGATAACCAGTTCAGTGGGTTGATTCCTGATGCAATTGGATCATTGAGTAACCTTTTAGAATTTCATGGTGGCAATAATAAGCTTTCTGGTAGATTCCCTGATAGCATTGCCAAATTGATCCAGTTGGGTACTCTTGATTTGAGTTATAATGAAATGTATGGTGAAATTCCGGGTTGGATTAGGGGTTTGAATAATCTCATTGAGCTTAATTTGGCACATAATAGTTTTGGTGGCACAATTCCAAAGGAATTAGGAAGCTTGTCTGAGCTCACTTTCCTTGATCTTTCTAATAACCAACTTTCCGGTGAGATTCCATTAGAGCTGCAGAATTTGAAGCTCAATAAGTTCAATTTGTCATACAATCAGCTTTCTGGGGATGTTCCGCCTCATTATGCCACTAAGAATTATGAAATGAGTTTTATAGGAAATCCTGAACTTTGTGTTAATGAATCTGTGAAATGTCTTAGCTCGAAGGGGAGACATTACCGGATGTATGTCTGGACTTTTGCACTTGCTGCAATCTTGTTTATCCTTGGGGTGGCTGTGTTTTACCTGAGATACAGGAATTTCAGAAATAAGAAGAAAGGTTCCAATGTTTCAAAGTGGAGATCGTTTCATAAGCTGGCCTTTGATGAGTTTGAGATTGTGAAATTGATGAGTGAAGAAAATGTGATAGGGAGTGGATCATCTGGGAAGGTCTACAAGGTTGTTCTAAGCAGCGGTGATGTTGTGGCTGTCAAGAAATTATGGGGAGCAACCAATAACGGAAACAGAACTGGGATTGTTGGTTCTGAAAAAGATGAATTTGATGTTGAAGTTGAAACACTAGGAAAGATAAGGCACAAAAATATCGTAAGGTTGTGGTGTTGCTGTAACAGTGGTGATAGCAGGCTCCTGGTTTATGAATATATGCCGAATGGGAACTTGGCTGATATGTTGAAGAGTAGCAAGAAAAGCTTGTTGGATTGGCCAACTAGGTACAAGATTGCAATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGGTATTGTGCCCCCCATTTTTCATAGGGATGTAAAATCGAACAATATATTGCTCGACAATGAGTTTGGAGCAAAAGTTGCTGATTTTGGAGTTGCCAAAGTTGTTAGGGAAGCTAGCCAAGGGGCAGAGTCCATGTCTGTAATTGCAGGTTCTTATGGTTACATCGCACCAGAATATGCATATACTCTTCGGGTGAATGAAAAGAGTGATATTTATAGCTTCGGCGTGGTCATTTTGGAGTTAGTAACTGGAAAGCCCCCGATTCATGCAGATTATGGGGAAAATGATCTGGTAAAATGGGTCTCATGCTTGTTGGAACAGAATGGAATGGATCATGTGATTGATCCTAGCCTTGATTCAAAATACAGGGAGGAAATCAGCAAGGTACTTAATGTAGGGCTTCTCTGCACAAGCGCTCTCCCTATAAACCGCCCTGCAATGTGGAGAGTGGTGAAAATGCTTAAGGAAGCAGCAACAGTTCCCAAATCTCAAAGGGTGATGGAGGTAACACTCACTCCTTATCTTGATAAAGAGACTTGTTATCTTGAAATAACCATAGTTTGA 2988 0.4608 MLPFTFILTTFLLLFIYSQPSLSLNQEGLLLLQFKNHLTDRNNALSSWNPSDTTPCHWLGVTCRSTTKTPVTVTVTALNLSSVALIGPLPAIPLCRLPALTTLSIPDSYISDTIPQSLSACRRLRHLDLSQNTLVGTIPPSLSLLTDLRHLDLSFNNLSGDIPAQLSHLRCLEYLDLVSNFLDGPFPNSLTNVTSLKYLRLAYNLFAPSQLPSQLGQLANLKVLWLSSCNLIGPIPNSIGNLTCLENLDLSKNKLTGEIPESITGLNSVLQIELYENALTGALPRGLGNLTRLRQFDASDNKLTGTIPEELCELPLDSLNLYNNSLEGSLPASIARSPNLHELKLFRNELVGSLQSELGSNSQLQILDVSFNRFSGELPASLCRWGKLEELLMLSNSFSGKIPESLGNCTSLRRVRIGNNNLSGKVPDAFWGLPHLHLLELNSNSFSGSISNLISFAYNLSDLRISDNQFSGLIPDAIGSLSNLLEFHGGNNKLSGRFPDSIAKLIQLGTLDLSYNEMYGEIPGWIRGLNNLIELNLAHNSFGGTIPKELGSLSELTFLDLSNNQLSGEIPLELQNLKLNKFNLSYNQLSGDVPPHYATKNYEMSFIGNPELCVNESVKCLSSKGRHYRMYVWTFALAAILFILGVAVFYLRYRNFRNKKKGSNVSKWRSFHKLAFDEFEIVKLMSEENVIGSGSSGKVYKVVLSSGDVVAVKKLWGATNNGNRTGIVGSEKDEFDVEVETLGKIRHKNIVRLWCCCNSGDSRLLVYEYMPNGNLADMLKSSKKSLLDWPTRYKIAIDAAEGLSYLHHGIVPPIFHRDVKSNNILLDNEFGAKVADFGVAKVVREASQGAESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPIHADYGENDLVKWVSCLLEQNGMDHVIDPSLDSKYREEISKVLNVGLLCTSALPINRPAMWRVVKMLKEAATVPKSQRVMEVTLTPYLDKETCYLEITIV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152970g00002 995 SMART LRR_typ_2 193 218 IPR003591 -
Stsc152970g00002 995 SMART LRR_typ_2 145 169 IPR003591 -
Stsc152970g00002 995 SMART LRR_typ_2 553 576 IPR003591 -
Stsc152970g00002 995 SMART LRR_typ_2 529 552 IPR003591 -
Stsc152970g00002 995 SMART LRR_typ_2 242 266 IPR003591 -
Stsc152970g00002 995 SMART LRR_typ_2 290 314 IPR003591 -
Stsc152970g00002 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 379 966 - -
Stsc152970g00002 995 Gene3D Ribonuclease Inhibitor 24 189 IPR032675 -
Stsc152970g00002 995 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Stsc152970g00002 995 ProSiteProfiles Protein kinase domain profile. 685 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152970g00002 995 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Stsc152970g00002 995 SMART serkin_6 685 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152970g00002 995 PRINTS Leucine-rich repeat signature 245 258 - -
Stsc152970g00002 995 PRINTS Leucine-rich repeat signature 553 566 - -
Stsc152970g00002 995 FunFam Receptor-like protein kinase HSL1 315 622 - -
Stsc152970g00002 995 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Stsc152970g00002 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 193 - -
Stsc152970g00002 995 Gene3D Ribonuclease Inhibitor 267 336 IPR032675 -
Stsc152970g00002 995 Gene3D Ribonuclease Inhibitor 196 266 IPR032675 -
Stsc152970g00002 995 FunFam Leucine-rich repeat receptor-like protein kinase 770 978 - -
Stsc152970g00002 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Stsc152970g00002 995 Pfam Protein kinase domain 687 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152970g00002 995 ProSiteProfiles Leucine-rich repeat profile. 555 578 IPR001611 GO:0005515
Stsc152970g00002 995 FunFam Receptor-like protein kinase HSL1 668 769 - -
Stsc152970g00002 995 Gene3D Transferase(Phosphotransferase) domain 1 770 980 - -
Stsc152970g00002 995 Gene3D Ribonuclease Inhibitor 337 624 IPR032675 -
Stsc152970g00002 995 SMART LRR_sd22_2 290 313 - -
Stsc152970g00002 995 SMART LRR_sd22_2 145 177 - -
Stsc152970g00002 995 SMART LRR_sd22_2 242 268 - -
Stsc152970g00002 995 SMART LRR_sd22_2 553 574 - -
Stsc152970g00002 995 Pfam Leucine rich repeat 523 566 IPR001611 GO:0005515
Stsc152970g00002 995 Pfam Leucine rich repeat 245 303 IPR001611 GO:0005515
Stsc152970g00002 995 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Stsc152970g00002 995 ProSiteProfiles Leucine-rich repeat profile. 147 170 IPR001611 GO:0005515
Stsc152970g00002 995 SUPERFAMILY Protein kinase-like (PK-like) 685 962 IPR011009 -
Stsc152970g00002 995 Gene3D Phosphorylase Kinase; domain 1 668 769 - -
Stsc152970g00002 995 SUPERFAMILY RNI-like 78 399 - -
Stsc152970g00002 995 SUPERFAMILY L domain-like 317 622 - -
Stsc152970g00002 995 FunFam Leucine-rich receptor-like protein kinase family protein 211 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152970g00002 Stsc-Chr152970 5250 8662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152970g00002 22 987 Receptor kinase-like Gene Family AT1G28440 55.838 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc152970g00002 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152970g00002 - - gmx:100796415 1174.84