Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152964g00001 ATGCCACCCCAACAACCCCTCCTGGAGCCAGAAGAGGACACGGCCTACGACTCCTCCGAGAAGGTGGTAGTGGTGGGAGTGGACGATTACGCCGATGATGTGGAGGTTCCACCCTTCTCGTGGAAGAAGCTGTGGCTGTTCACGGGGCCGGGGTTCTTGATGAGCATAGCATTTCTTGACCCAGGCAACTTGGAGGGAGATCTTCAGTCGGGTGCGATTGCAGGCTACTCGCTGCTGTGGCTTCTGATGTGGGCCACCCTAATGGGCCTTCTCATTCAGCTGCTGTCGGCGAGGCTCGGAGTGGCCACAGGGAGGCACCTGGCTGAGCTGTGCAGGGAGGAGTACCCGCCATGGGCCAGGATTGTGCTTTGGCTCATGACTGAGTTGGCTCTTATTGGCGCCGACATTCAAGAGGTTATTGGCAGCGCTATTGCTATCAGAATTCTCAGCAACGGACTCGTTCCTCTCTGGGCTGGTGTTGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTCGAGAACTATGGTGTGAGGAAATTGGAGGCTTTTTTTGCTGCTCTGATTGCCATTATGGCGCTCTCATTTGCATGGATGTTCGGTGAAGCAAAACCCAATGGGGTTGATGTTCTTCTTGGGATTTTGGTTCCTAAACTTAGCTCCAGAACAATAAAGCAAGCTGTTGGAGTTGTTGGTTGCATCATTATGCCTCACAACGTGTTCTTGCATTCTGCTCTCGTTCAGTCAAGGCAGGTTGACCAAACCAAGAAAGGCCGTGTTCAAGAAGCTCTTAATTACTACTCCATTGAGTCTACCTTGGCCCTTGTAGTCTCTTTCGTCATCAATATTTTCGTCACGACTGTGTTCGCTAAGGGCTTTTACGGTACTGAAATAGCAAATAGTATTGGTCTTGTAAATGCAGGGACTTATCTTCAGGACAAGTATGGGGGTGGATTATTCCCAATCCTATATATATGGGGCATTGGTTTGTTAGCAGCAGGGCAAAGTAGCACTATAACTGGTACATATGCTGGACAATTCATCATGGGAGGTTTTCTGAATTTAAGGCTGAAGAAATGGGTAAGGGCGTTAATAACTCGAAGCTGCGCAATCATCCCAACCATAATAGTCGCTCTTATCTTCGATACCTCGGAGGAATCTTTAGATATCTTGAATGAATGGCTTAATGTTCTTCAGTCAGTTCAAATCCCATTTGCGCTTATTCCCTTGCTTTCCTTGGTGTCCAAGGAACAGATAATGGGCACTTTCAGAATTGGTCCTGTCCTCGAGATTATTTCTTGGCTAGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTATTGGTAGACTTCTTCTCCTCTGAAGTGAATGGAGTAGTGTTTGCTGTTGTAATGTGCGCCCTAACAGCTGCGTATGTTGCATTTGTAATATACCTTATTGCACGAGCCGTGACCTCTTCGCCTTGGCGAAGTTTAACTCGATCAAAGGCAGCTGCCAGCACAGAGAACTGA 1512 0.4762 MPPQQPLLEPEEDTAYDSSEKVVVVGVDDYADDVEVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARLGVATGRHLAELCREEYPPWARIVLWLMTELALIGADIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAALIAIMALSFAWMFGEAKPNGVDVLLGILVPKLSSRTIKQAVGVVGCIIMPHNVFLHSALVQSRQVDQTKKGRVQEALNYYSIESTLALVVSFVINIFVTTVFAKGFYGTEIANSIGLVNAGTYLQDKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSCAIIPTIIVALIFDTSEESLDILNEWLNVLQSVQIPFALIPLLSLVSKEQIMGTFRIGPVLEIISWLVAALVIVINGYLLVDFFSSEVNGVVFAVVMCALTAAYVAFVIYLIARAVTSSPWRSLTRSKAAASTEN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 153 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 123 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 334 353 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 227 250 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 396 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 178 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 PRINTS Natural resistance-associated macrophage protein signature 362 379 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 Hamap Divalent metal cation transporter MntH [mntH]. 31 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 NCBIfam Nramp family divalent metal transporter 49 418 - -
Stsc152964g00001 503 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 485 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 Pfam Natural resistance-associated macrophage protein 65 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc152964g00001 503 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 42 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152964g00001 Stsc-Chr152964 3872 6413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152964g00001 28 489 Inorganic Solute Cotransporters AT2G23150 78.891 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152964g00001 K21398 - gmx:100789871 878.241