Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152954g00001 ATGGGAGGAGGAACATCAATAACCAACTCCCTCTTCTTTTCATCACTACTCCTCTTATTATCTTTATTCCAACTACTCCACTCCCAAAACGGCGTCGTTTACGCACAAGAGAAAATAGCATCGTCCGAGGAAGAAGCACTGGGCATATTTCAACAAAGAGAGACACTTGAAATCATCATTGGAGGTGGAGGCTCACCTTCCCCTGCACCTGCACCTTCTCCACCGGAATATACCCCCTGTCCTCCGCCGCCGAAACCGCCTAGCCGTTTGGAGAAAGCAAGAAAAGTGCTCCTAAACTTCACCAACTACATCGTAGACCCAAAAGGCTTCACCAATAACTGGTGCTCCCAAACATTTAACACGTGCGATTTCAACGGTATACGGTGTGCCACATACCCAATCTCTAACGAACCTGCCGTAGCTGGGTTGGACCTCAACCAAGCCGGAATCTATGGCCGCAACAACAAGCCTCTTTCCCTCTCTGGAATCTTGGACAGGATTCCGGAACTCACATTCTTCCATGTTAACTCCAACAACTTCTCCAGTTCCGTACCAAAGGAAATTGTCAGTTACGGGTTCTTCTACGAGCTTGATCTTAGCAACAACAAGCTTTGTGGTCAGTTTCCAATGGAAACGCTTCAGAACAACAACCTAGTGTTCTTAGACCTCCGGTTCAACCAGCTCACCGGCCCCATTCCTTCGAAACTATTCGATATTCATCTCGACGTTATTTTCATCAACAACAACCGGTTCAACCAGTACCTCCCCGAGAATTTCGGAAATACCATCGCAAGGTACCTCACATTTGCCAACAACCAATTGTGCGGTCCGATACCGAGGAGTATCGGCAAGGCGGCGAACACTCTGACGGAGGTGCTCTTCCTTGGGAACAACTTCGATGGCTGCTTGCCATACGAAATCGGAAACCTCAAGAAAGCGGTAGTGTTTGATGTGAGCAAGAACCATTTAACGGGTCCAATACCGTACTCCTTCGGCTGCTTGAGGCAGATTCAGTTCTTGAATCTCGCAAACAACAAATTCTACGGCGCAGTTCCGGAGAACGTTTGCAAGCTTCCGGGGCTGATCAAGAACGGAAACTTAACCCTATCAAACAACTACTTCACAGCGGTTGGTCCTGAATGCTGGAAATTGATAAGGTCAAAGGTTTTGGACTTGACCAATAACTGTGTTCCGGGCTTACCGAAGCAGAGGTCGCACAAAGAGTGTTGGGAGTTTCTTCATAGTGTGAAGCCTTGTCCCAATGAGAAGTATCTTTTGAGTTATTCACCTTGTGCGGGGCACTGGAATAAGGAGAGTGAGGACACCGAGGAGGTTGCCGCGGCTCCGCCTGTTACTTATAACGCTCTGAAACCGCACCGGTTGAGACTTTGA 1392 0.482 MGGGTSITNSLFFSSLLLLLSLFQLLHSQNGVVYAQEKIASSEEEALGIFQQRETLEIIIGGGGSPSPAPAPSPPEYTPCPPPPKPPSRLEKARKVLLNFTNYIVDPKGFTNNWCSQTFNTCDFNGIRCATYPISNEPAVAGLDLNQAGIYGRNNKPLSLSGILDRIPELTFFHVNSNNFSSSVPKEIVSYGFFYELDLSNNKLCGQFPMETLQNNNLVFLDLRFNQLTGPIPSKLFDIHLDVIFINNNRFNQYLPENFGNTIARYLTFANNQLCGPIPRSIGKAANTLTEVLFLGNNFDGCLPYEIGNLKKAVVFDVSKNHLTGPIPYSFGCLRQIQFLNLANNKFYGAVPENVCKLPGLIKNGNLTLSNNYFTAVGPECWKLIRSKVLDLTNNCVPGLPKQRSHKECWEFLHSVKPCPNEKYLLSYSPCAGHWNKESEDTEEVAAAPPVTYNALKPHRLRL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152954g00001 463 Gene3D Ribonuclease Inhibitor 264 421 IPR032675 -
Stsc152954g00001 463 MobiDBLite consensus disorder prediction 67 87 - -
Stsc152954g00001 463 SUPERFAMILY L domain-like 91 397 - -
Stsc152954g00001 463 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 437 - -
Stsc152954g00001 463 Gene3D Ribonuclease Inhibitor 90 263 IPR032675 -
Stsc152954g00001 463 MobiDBLite consensus disorder prediction 61 88 - -
Stsc152954g00001 463 Pfam Leucine rich repeat N-terminal domain 93 129 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152954g00001 Stsc-Chr152954 3025 4836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152954g00001 89 419 Trihelix Transcription Factor Family AT1G12040 42.262 3.60e-74 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152954g00001 - - ccaj:109818312 508.449