Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152952g00001 ATGGTTGATTGCTGCTTCCCGTGTTTTAGCTCTCAGAAAAGCAAGAGGATTAACAGCAAGAGCGCAGAGTCTTCTAAACACGATAATTTTGTAGCAAAACCACCTGATATGAAAAATAAAAGGCCAGAAGATGCAGCCCCAATTGATCCTGCAAACATTAAGGCAACACATTACACTTTCCGTGAGCTGGCCACAGCAACAAAAAACTTCCGTCAAGAATGCCTGCTTGGTGAAGGAGGCTTTGGTAGAGTATACAAGGGCGTCATCCCCGCTACCGGCCAGGCTGTGGCTGTGAAGCAACTTGATCGGAATGGTATGAATGGCAATAAGGAGTTTTTGAATGAGGTGTATACACTGAGTCAGTTGAACCATGAAAACATTGTCAACCTCGTTGGTTATTGTGCTGATGGTGATCAACGCCTATTGGTGTATGAGTTCGTTCAAGGCACTGCTCTAGACAATCGTCTTCTTGAGAACAAAGGGGATCAAACTCCACTAGATTGGTACACCAGAATGAAAGTGGCAGCGACCGCGGCCAAAGGACTAGAATACTTGCATGACAATGCCAATCCTCCAATCATATTCAAGGACTTGAAACCCTCTGATATACTACTGGATGGAGACAATAATGCTAAGCTCTTTGGTTTTGGTTTGGGACAACATGGAAATGACAAGATGAACCTTGCACCTACAAGGGTTATGGGAACATATGGTTACTCTGCTCCTGAGTATGTAAGAACTGGTCAACTCACCTTGAAGTCTGATGTTTATAGTTTTGGGGTCGTGTTGCTTGAGCTCATCACCGGACGCCAAGCAGTAGACACCACAAGGCCAAATGATGAGCAAAACCTCGTTTCATGGGCACAACCCATATTCAAAAATCCAAAGAGATTTTCAGACATGGCAGATCCAAATCTCAACAAAAACTTTCCAGAAAAGGATCTGAACCAAGCTGTTGCAATAGCATCAATGTGCTTACAAGAAGAAGCTGAAGCACGTCCTTTGATGAGTGACGTTGTCACCGCTCTGAGTTTCCTTTCCATTGTTCCTCCACCGGGGGCTGTGCAACCTATGCCTATTCCAAAGGCACCCTCCATGGATTCCAAGAAGGACTCTAAAGGCAAGCAAGACCATAGGGATAGCGAAAGTGGAAGTGAAAGCGACCGCAGAAGTGAGAGGTCTTACTCCCGTGCAAGCAGCAGGAGAACAATGAGTAGAACGTGCAGTTCAGATTCAGATGGAAGTTATTCCTCCAGCAGCTATCTGAGCGATAGCAGCCATTCCGATCGTGAAGTAAGCATCAAGAGAACAAGCAGAAAGCATTCTTCTAGAGACGCTGGCAAAAAGCACAGCAGCAGAAAACATTCTACCAAAGACATAATACGCAAACAGAAGAGCACAAAGAAATCCGTTGCTGTTGAAGAAGGCGGTAATAAAAAGTCCTCTGAATTGAAGAAGAAGAGCACGAAGAAATCGTCCAAGAAGGGTTCGGGGAATAATAAGAGCAACAAAAAATCCCCTTTGAAAATGTGGAGCGACAAGAGTAGCAAGAAGTCGGATGACGACGAAAGCATTTCTATTAGCAGAAGTAGCAGCAGCGTGATCTCGGAAGATGAGATAATAGAGCACATGGAAAGCAGGGTATCCGGGAATATATCTTTTGGGCTTATAAGCAGCGAGAGCACTAACAGCAATAGATCTGATGAGGAGTAA 1713 0.4466 MVDCCFPCFSSQKSKRINSKSAESSKHDNFVAKPPDMKNKRPEDAAPIDPANIKATHYTFRELATATKNFRQECLLGEGGFGRVYKGVIPATGQAVAVKQLDRNGMNGNKEFLNEVYTLSQLNHENIVNLVGYCADGDQRLLVYEFVQGTALDNRLLENKGDQTPLDWYTRMKVAATAAKGLEYLHDNANPPIIFKDLKPSDILLDGDNNAKLFGFGLGQHGNDKMNLAPTRVMGTYGYSAPEYVRTGQLTLKSDVYSFGVVLLELITGRQAVDTTRPNDEQNLVSWAQPIFKNPKRFSDMADPNLNKNFPEKDLNQAVAIASMCLQEEAEARPLMSDVVTALSFLSIVPPPGAVQPMPIPKAPSMDSKKDSKGKQDHRDSESGSESDRRSERSYSRASSRRTMSRTCSSDSDGSYSSSSYLSDSSHSDREVSIKRTSRKHSSRDAGKKHSSRKHSTKDIIRKQKSTKKSVAVEEGGNKKSSELKKKSTKKSSKKGSGNNKSNKKSPLKMWSDKSSKKSDDDESISISRSSSSVISEDEIIEHMESRVSGNISFGLISSESTNSNRSDEE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152952g00001 570 Gene3D Transferase(Phosphotransferase) domain 1 148 347 - -
Stsc152952g00001 570 SUPERFAMILY Protein kinase-like (PK-like) 56 367 IPR011009 -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 19 47 - -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 351 570 - -
Stsc152952g00001 570 FunFam Serine/threonine-protein kinase PBS1 147 352 - -
Stsc152952g00001 570 Gene3D Phosphorylase Kinase; domain 1 35 146 - -
Stsc152952g00001 570 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 441 462 - -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 366 399 - -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 507 525 - -
Stsc152952g00001 570 ProSiteProfiles Protein kinase domain profile. 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152952g00001 570 CDD STKc_IRAK 76 343 - -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 484 498 - -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 400 427 - -
Stsc152952g00001 570 FunFam probable serine/threonine-protein kinase RLCKVII 43 146 - -
Stsc152952g00001 570 PANTHER OS07G0668900 PROTEIN 5 347 - -
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 463 483 - -
Stsc152952g00001 570 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152952g00001 570 MobiDBLite consensus disorder prediction 15 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152952g00001 Stsc-Chr152952 5641 8758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152952g00001 5 410 Glycoside Hydrolase AT3G07070 55.000 5.57e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc152952g00001 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152952g00001 - - gmx:100807682 512.686