Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152923g00001 ATGGCGGCCGCTTTTGATTTCCATGACTACATCCAACTTTTCCTCATTTGGCTTATCTCCACCATCGTTGTTCGACTCATTCTCACAAGAAACCGCAAGAAAAACGGTCATCAAAACTCACTACCAAGTCCACCATCACTACCTATCATTGGACACCTTCACTTAATCTCTTCCTTACCACACCAAAGCTTCCATAGCCTCTCATCTCGCTATGGACCCATCATGCAAGTCTTCCTCGGCTCGCTCCCTTGTGTGGTGGTTTCTTCTCCGGAAATTGCGAAAGAGTTTCTCAAAACACATGAAACCGCCTTCTCCGACCGCTTCAGAAGCTCTGCAGTTCATTACTTGTCTTATGGCTCAAAGGGTTTCTTGTTTGCGCCTTATGGAAGCTTCTGGAAGTTCATGAAGAAGCTCTGCATGTCAGAGCTTCTTGGTCAACGTACACTTGACCAACTTCTCCCCTTAAGAAAGCAGGAGACTCTCAGATTCCTTAAAGTCCTACAGAAAAGGGGAGAAGCTGGCGAATATGTTGACCTTGGTGACGAGCTTTTGACTCTCACCAACAGCGTCATTTCGAGGATGACGATGAGCGTGACATGTTGCGAGGACGGCGACAATAGCAACAGCGATGACGCAGAAGCTATGAGGAAGATGGTGAAAGACACTGCTGAGCTTGCTGGGAAGTTTAATGTTTCGGATTTTATTTGGTTGTTTAAGAATTGGGACTTACAAGGGATGAATAAGAGGCTTAAGGAGATTTTAGAGAGGTTTGATTCAATGATTAAGAGAATCATAAAAGAGCATGAATTTGTAAGGAAGAAAAAAAAAGAAGGTGAAAGTGAAGGTGTTAGTGTGAGGGACTTGCTTGATATTTTGCTGGAAATATATGAAGATAAGAAGAGGAATGATGAGATAGAATTGAGCACAGACAATATCAAGGCTTTCATATTGGACATATTCATGGCAGGAACTGACACGTCAGCTATCACTATTGAATGGGCTCTTGCAGAGTTAATCAACAACTCACATGTAATGGAGAAAGCAAGACAAGAGATTGATTCAGTAACAAGAAGAAACAGACTAATAGAAGAATCAGATCTTCCAAACCTTCCTTACTTGCGAGCCATTGTTAAAGAAACACTAAGACTTCATCCCGCGGCACCACTTTTAGGGAGACGATCAACTGAACCCTCTACCGTATGTGGCTATGAAATTCCATCAAAGTCCTTATTGTTTATTAACTTGTGGTCTATAGGTAGGGACCCTAAGATTTGGGACAACCCTCTCGAGTTTAGGCCAGAGAGGTTCATGGAAGAAGGACAATTGATGGATGTGAGGGGACAACATTTTCAACTAATGCCATTTGGAACTGGAAGAAGGGTGTGCCCTGGAGCTTCTCTAGCGCTTCAAATTGTGCCTTCTAATCTTGCTGCCATGATTCAGTGTTTTGAATGGAAGGTTGATGGGGTTGTTAGTATGGAAGAGAAACCTGGCATGACATCTCCAAGAGCTCATCCTTTAATTTGTGTCCCTGTGCCTCGCTTTAATGTCTTTCCTTCTATTGATTCTGTGTAG 1575 0.4298 MAAAFDFHDYIQLFLIWLISTIVVRLILTRNRKKNGHQNSLPSPPSLPIIGHLHLISSLPHQSFHSLSSRYGPIMQVFLGSLPCVVVSSPEIAKEFLKTHETAFSDRFRSSAVHYLSYGSKGFLFAPYGSFWKFMKKLCMSELLGQRTLDQLLPLRKQETLRFLKVLQKRGEAGEYVDLGDELLTLTNSVISRMTMSVTCCEDGDNSNSDDAEAMRKMVKDTAELAGKFNVSDFIWLFKNWDLQGMNKRLKEILERFDSMIKRIIKEHEFVRKKKKEGESEGVSVRDLLDILLEIYEDKKRNDEIELSTDNIKAFILDIFMAGTDTSAITIEWALAELINNSHVMEKARQEIDSVTRRNRLIEESDLPNLPYLRAIVKETLRLHPAAPLLGRRSTEPSTVCGYEIPSKSLLFINLWSIGRDPKIWDNPLEFRPERFMEEGQLMDVRGQHFQLMPFGTGRRVCPGASLALQIVPSNLAAMIQCFEWKVDGVVSMEEKPGMTSPRAHPLICVPVPRFNVFPSIDSV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152923g00001 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Stsc152923g00001 524 Pfam Cytochrome P450 42 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 FunFam Cytochrome P450 family protein 32 509 - -
Stsc152923g00001 524 Coils Coil 345 365 - -
Stsc152923g00001 524 Gene3D Cytochrome P450 25 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PANTHER CYTOCHROME P450 98A9 12 514 - -
Stsc152923g00001 524 SUPERFAMILY Cytochrome P450 39 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 CDD CYP93 72 511 - -
Stsc152923g00001 524 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc152923g00001 524 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152923g00001 Stsc-Chr152923 1245 4994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152923g00001 6 514 Cytochrome P450 AT5G06900 47.461 1.28e-163 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152923g00001 K24188 - gmx:100805931 719.924