Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152915g00001 AATGAAAGCAAAGTTATAGAGGATATTGTTGCACATGTTACCTCCTTGCTAGATTCAACGGACTTATTTGTTGCAGAGCATCCAGTGGGAGTAAACTCACGTGTCCAAGATTTGATTCAACTCATAAATAATCACAAATCAGATGATGCTCTTGTAATAGCAATATGGGGAATGGCGGGAATAGGTAAAACAACAATTGCTAAAGCCCTCTACAATCAACTTAGCCGCAACTTTGATGTCAGGAAGTTTGTCCCAAACATCAAGGGAAGGCTGAACGATATAATCTGGCATCTACACAAGGATCTTCTTTCCGTTCACGGGATAAGTGTTAAAACAAGTCTTATGAGGGATAGTCATTGCATCTCAAAGGTCTTTCTCGTAATTGACAATGTGAGAACTGATCTAGAACTCCTGGAGATTTTGTCGCTAACTAGAAATATTCGTGAATTTTTTGGTCCTGGGACTATAGTAATCATCACGACAAGGGTTAACACTGATCCATTTTCTCATATTAAATTTAATAATATATACAGGGTGAAAGAAATGGACTATAATGAATGTGTTGAGCTTTTTAGTTGGAGCGCATTCAAGAAACCAACTCCTGAAAGAAGTTTTTCTGGGCTTATTAATTATGCAATTGAATTTTCTGATGGACTGCCACTCGCTCTTGTGGCTATTGGCTCTGCATTGTCTGAAAAAAATATAGAAGAGTGGGAGAATGTATTGGATAGGATCAAAACAGTTCCCCTGCAAGATGTATGGCAAATTTTAAAAAAATGCATTAATTCTGTTCGATATAAAGAGAAGAAAATGTTTGTTGAACTAGCTTATTTGGGATATCTCTTTATTGGAATGGACCGAAATGATATAAGCCAATTATTACAAGAAGCTGGACATGACGAAGCAAGAAGAGCAATCAAAGTGCTTGAAGAGCATAGTCTTGTGTGGTTTGAAGAGGACAAGCTTTGCATGCATCGTTTGCTACAACACATCGGAACAGAAATGTATATGAAAGAATCATCCATTGAGCCTCAGCAAATGCCACATGATGTATTCTTGAGCTTTCGAGGCAGCGACTCTCGTTCAAAGTTCATTTCACATCTTCATTCATCTCTTGAAAATGCCGATCCCTCAGAAGTGCGAAATCAAACCGGCGCGTTTGGACAAGCTTTTGATGATCTTATTAAAGGATACCCGCATAAAATAAAAGGCAAGGAGCAGAGTTGGAGGAAAGCACTCCGTGAAGTTGGATGCCTTGCAGGGATGAAAGTGAAGAAGTACATTGTTGAGCATGTTACTCATATGCTAGACATGAAGGAATTGTTCGTTGCTAATCATCCAGTTGGAGTTGAATCTCGTGTTGAAGAAGTGATTAAACTATTAAGAAACCAGCAACAAGAAACTCCTCTACTACTAGGTATATGGGGCATGGGAGGCAGTGGCAAAACAACCATTGCTAAAGCACAACGTCTTTCTGCTGTCTACAAGACAACGAAAATAAAGATAGACAACACTGATTCTGGAAAATCAATATTAGAGAAAAGACTTGGCCAGAAAAAGATACTTCTTGTACTTGATGATGTGGACAAATTGGAACAGATTTATTCTTTAGCTGCAAGTCGTAAATGGTTCTGTCCAGGGAGCACAATAATCATCACAACAAGAGATGAACATCTTCTTCGTTGTCTTAAAATTGATAAGTTATATGGTATAAAAGTGTTAAATGAGAAAGAATCCATGGAACTTTTTAGCTGGCACGCATTCAAAGAACCGAGCCCCAAAAAAGAGTTTGCTTTACTTGCTAATGAAGTTGTTTCATATTGTGAGAGATTGCCACTGGCTCTTGAAGTGATTGGGTCACATTTGTTTACTAGGGAAGTATATGAATGGAAGGACGTTTTGAAGAAACTCAAAACAATTCCCAACAACGATGTACACAAGAAGCTTAAAATAAGTTTTGATGGTCTAAGTGATGATAGGGATAGAGAAATCTTTCTTGATGTTGCATTTTTCTTTATTGGAATGGACAAAAATGATGTAGTTGATATACTAAATGGCTGTGGGCATTCTGCTGAAATCGGAATAAATATTCTTATGGAACGATGCCTTATTACTGTGGACACTAAGAGGAAACTTGGCATGCATGGTTTGCTGTGA 2157 0.3788 NESKVIEDIVAHVTSLLDSTDLFVAEHPVGVNSRVQDLIQLINNHKSDDALVIAIWGMAGIGKTTIAKALYNQLSRNFDVRKFVPNIKGRLNDIIWHLHKDLLSVHGISVKTSLMRDSHCISKVFLVIDNVRTDLELLEILSLTRNIREFFGPGTIVIITTRVNTDPFSHIKFNNIYRVKEMDYNECVELFSWSAFKKPTPERSFSGLINYAIEFSDGLPLALVAIGSALSEKNIEEWENVLDRIKTVPLQDVWQILKKCINSVRYKEKKMFVELAYLGYLFIGMDRNDISQLLQEAGHDEARRAIKVLEEHSLVWFEEDKLCMHRLLQHIGTEMYMKESSIEPQQMPHDVFLSFRGSDSRSKFISHLHSSLENADPSEVRNQTGAFGQAFDDLIKGYPHKIKGKEQSWRKALREVGCLAGMKVKKYIVEHVTHMLDMKELFVANHPVGVESRVEEVIKLLRNQQQETPLLLGIWGMGGSGKTTIAKAQRLSAVYKTTKIKIDNTDSGKSILEKRLGQKKILLVLDDVDKLEQIYSLAASRKWFCPGSTIIITTRDEHLLRCLKIDKLYGIKVLNEKESMELFSWHAFKEPSPKKEFALLANEVVSYCERLPLALEVIGSHLFTREVYEWKDVLKKLKTIPNNDVHKKLKISFDGLSDDRDREIFLDVAFFFIGMDKNDVVDILNGCGHSAEIGINILMERCLITVDTKRKLGMHGLL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152915g00001 718 Gene3D - 182 268 IPR042197 -
Stsc152915g00001 718 SMART AAA_5 49 183 IPR003593 GO:0016887
Stsc152915g00001 718 SMART AAA_5 468 570 IPR003593 GO:0016887
Stsc152915g00001 718 Gene3D - 317 375 IPR035897 -
Stsc152915g00001 718 SUPERFAMILY Toll/Interleukin receptor TIR domain 340 414 IPR035897 -
Stsc152915g00001 718 SUPERFAMILY "Winged helix" DNA-binding domain 645 708 IPR036390 -
Stsc152915g00001 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 667 IPR027417 -
Stsc152915g00001 718 PRINTS Disease resistance protein signature 216 230 - -
Stsc152915g00001 718 PRINTS Disease resistance protein signature 118 132 - -
Stsc152915g00001 718 PRINTS Disease resistance protein signature 52 67 - -
Stsc152915g00001 718 Gene3D - 493 567 IPR027417 -
Stsc152915g00001 718 Gene3D - 16 172 IPR027417 -
Stsc152915g00001 718 Gene3D - 376 443 IPR035897 -
Stsc152915g00001 718 Gene3D - 573 657 IPR042197 -
Stsc152915g00001 718 Gene3D - 444 492 IPR027417 -
Stsc152915g00001 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 273 IPR027417 -
Stsc152915g00001 718 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 349 718 IPR044974 GO:0006952
Stsc152915g00001 718 Pfam NB-ARC domain 508 643 IPR002182 GO:0043531
Stsc152915g00001 718 Pfam NB-ARC domain 35 264 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152915g00001 Stsc-Chr152915 2538 5570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152915g00001 448 718 WRKY Transcription Factor Family AT5G45050 33.000 9.28e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152915g00001 - - ahf:112749517 854.358