Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152905g00001 ATGGAGCTCTTCGCTGATATTGCCCCCAAAACCACTGAGAATTTCAGGCAGTTCTGCACTGGAGAGTACAGGAAAGCAGGACTGCCTGTCGGCTACAAGGGTTGTCAATTTCACAGGGTTATTAAGGATTTTATGATTCAGGCCGGTGATTTCATAAAGGGTGATGGTAGTGGATGTGTCTCTATCTATGGACACAAGTTTGATGATGAAAATTTTATTGCCAAACACACTGGCCCTGGTCTTCTATCAATGGCAAACAGTGGAGCAAACACCAACGGTTGTCAGTTCTTCATAACTTGTTCAAAATGTGACTGGCTTGACAACAAGCACGTGGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTCCGGAAGATCGAGAACGTCGCAACTGGACCCAATAACCGACCGAAGTTAGCTTGTGTTATTGCTGAATGTGGTGAAATGTAA 453 0.4459 MELFADIAPKTTENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFIKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGANTNGCQFFITCSKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152905g00001 150 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 32 49 IPR020892 GO:0003755|GO:0006457
Stsc152905g00001 150 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 150 - -
Stsc152905g00001 150 Gene3D - 1 150 IPR029000 -
Stsc152905g00001 150 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 148 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 149 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 FunFam Peptidyl-prolyl cis-trans isomerase 1 150 - -
Stsc152905g00001 150 PIRSF Peptidylpro_ismrse 1 150 IPR024936 GO:0003755
Stsc152905g00001 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 49 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 107 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 80 95 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 3 18 IPR002130 GO:0000413|GO:0003755
Stsc152905g00001 150 SUPERFAMILY Cyclophilin-like 1 150 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152905g00001 Stsc-Chr152905 843 7933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152905g00001 1 148 U-box Gene Family AT5G67530 43.624 4.75e-28 106