Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152886g00003 GATGGAGGAAATGAAGGTTACAATGAAGAAAGTAAGAAAGAATCTTCTTCATATTTGTACAATAAAGTGAATGATAGTTCTTCACCTTCTCAATCCATGTCAATGATTGCAACTAATGTTCCTGATGAATTTCGCTGCCCGATTTCTCTTGACTTAATGAGGGATCCTGTGATTGTTTCATCCGGCCACACCTATAATCGAAATTCGATAGCGCAGTGGATAAACTCTGGCTACCATACTTGCCCCAAAAGTGGACAGAGGCTAATTCACACTGCTCTCATACCAAACTATGCAGTATGCACTGAAAAGTCTTGTTCAGCAATGGTGCCATGA 333 0.4024 DGGNEGYNEESKKESSSYLYNKVNDSSSPSQSMSMIATNVPDEFRCPISLDLMRDPVIVSSGHTYNRNSIAQWINSGYHTCPKSGQRLIHTALIPNYAVCTEKSCSAMVP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152886g00003 110 SUPERFAMILY RING/U-box 28 99 - -
Stsc152886g00003 110 PANTHER U BOX DOMAIN-CONTAINING 19 99 - -
Stsc152886g00003 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 106 IPR013083 -
Stsc152886g00003 110 MobiDBLite consensus disorder prediction 1 16 - -
Stsc152886g00003 110 CDD RING-Ubox_PUB 41 93 IPR045210 -
Stsc152886g00003 110 MobiDBLite consensus disorder prediction 1 34 - -
Stsc152886g00003 110 MobiDBLite consensus disorder prediction 17 34 - -
Stsc152886g00003 110 Pfam U-box domain 40 99 IPR003613 GO:0004842|GO:0016567
Stsc152886g00003 110 ProSiteProfiles U-box domain profile. 39 110 IPR003613 GO:0004842|GO:0016567
Stsc152886g00003 110 SMART Ubox_2 43 106 IPR003613 GO:0004842|GO:0016567
Stsc152886g00003 110 FunFam RING-type E3 ubiquitin transferase 40 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152886g00003 Stsc-Chr152886 10620 10953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152886g00003 13 99 U-box Gene Family AT5G01830 48.276 9.55e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152886g00003 - - gmx:100793498 142.124