Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152886g00002 ATGGAAGCTAGAGAGAATGCTGCAGCAACTATATTCAGCTTGACTATGCTAGATGAACGCAAGGTTCAAATCAAGGCAAGGCTGAGAGCTGTTCCTGCATTAGTACTACTCTTGAAAGAAGGCACACCAATTGGGAAAAGGGATTCAGCAACTGCACTATTCAACCTTGCAGTTTACAATCCAAACAAATCAATAATGGTGAATTCTGGTGCAGTTGATGTGCTTATTGAATTGCTAATGGATGATAAAGCTAGCATTACTGATGATGCATTATCAGTCCTTGCTTTGTTGCTTGGTTGCTCACAAGGACTACAAGAATTAAGGAATAGCAGAGAATTGGTTCCTCTTCTTATTGATCTTCTAAGATTTGGATCAGTGAAAGGGAAGGAAAATTCTATTACACTTCTCTTAGGATTGTGCAAGAGACCGAGGTGGTTGCGCGGCGGCTGTTGGCGAATCCACGGAGCGTGCCTTCGCTTCAAA 483 0.4224 MEARENAAATIFSLTMLDERKVQIKARLRAVPALVLLLKEGTPIGKRDSATALFNLAVYNPNKSIMVNSGAVDVLIELLMDDKASITDDALSVLALLLGCSQGLQELRNSRELVPLLIDLLRFGSVKGKENSITLLLGLCKRPRWLRGGCWRIHGACLRFK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152886g00002 161 SMART arm_5 20 58 IPR000225 GO:0005515
Stsc152886g00002 161 SMART arm_5 100 141 IPR000225 GO:0005515
Stsc152886g00002 161 SMART arm_5 59 99 IPR000225 GO:0005515
Stsc152886g00002 161 Pfam Armadillo/beta-catenin-like repeat 60 95 IPR000225 GO:0005515
Stsc152886g00002 161 Gene3D - 1 147 IPR011989 -
Stsc152886g00002 161 PANTHER U BOX DOMAIN-CONTAINING 2 142 - -
Stsc152886g00002 161 SUPERFAMILY ARM repeat 3 142 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152886g00002 Stsc-Chr152886 10132 10614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152886g00002 1 140 U-box Gene Family AT2G28830 48.571 8.43e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152886g00002 - - gmx:100793498 219.55