Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152870g00002 ATGGAATCAACCTCAACTAATTTTTCAAGATTTTTCAGCTCTTCCCTCAATTCTTCTAGTAGTATCTCTTTCATCGATATTAAGACCAAGGTGGCCCCATTATTATTTCAAGCATTTGAGACCGTTCCTCACTTAGACCAAATCTTATACATAGCCATGGAAGGTCTCTCCTTTTCATATTATAGAGATCATCTTCAAACTTTTTCAATCTTCTCCAACTCATCATCTTCATCATCGACTATTAATACATATTATATCCAACACATAGATCAAGACACTGGAGAGGCCCATGGTGAACCTACAAAATACAATTACTCTTCTATTAACCAAAATTTGATTTTGGAAGCTCTTGAATTTTCTTATTCATATGCATGCAACAATACCTCATTATTGGGCACCAATTGGACCATTATTATTGATAATAATGGCCATGACCCTTTGTTTCTCAACTCAGGAAGAGTCACAAGAACAAATGTGATCTCCCTAGGGTTTTCGGTAACAGAAATAACTGATTTTGTCTTGGCTCATGAAAACAATGGTGATAATCAAAGTTTAATAAGCATGGCTTGGGGTACAAAAGATGGAAGGGCTATTGTACAAGGGATCCCTAATACTCGTTTGGTGATTTCTAATGATACGGTTTCTCTTGAATCATTGGACCAAAATGGAAACCCTAATAATGGTGTTGAAGGCACTACTATACCATGCAACAATGAAAGATTTGAATCTAGTTTGAATATTCAGAAGAATGAATATTCAATTCACTGTAGCACGGTTGATATAATGGGCACAGAATCGGTATATGTTGTGGCTATCCCAAAGAATGAAGTAGTGAGCTTGGATCATCATGAGCGTTACAAGAAAAAGGGGTTGGCACTCTTGATTGTAATGATATTCATGATATTGATTGCTCTCCTAAGTTTTCTAAGCATGAATGCAAGAAATGCAAAGCGAGAAATGCGTTTGCGTGCATCACTCTTGAAACAAATGGAAGCAACCCAGCAAGCTGAGAGAAAGAACATGAACAAGACTCATGCTTTTGCTGCTGCCAATCATGATGTTAGGGCTTCTCTTGCTGGCCTCACTGCTTTGATAGACATGTCTTTTGACCTTGTTCAAAATGGCTCTGAATTGGAGACCAATTTGAAACAAATGAAGGGTTGCACCCAAGACTTGCTAGGACTTCTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATGCAGCTTGAGGAAGAGGAATTTGACTTATCAATTCTATTGGAAGACATAGTTGACTTATACTACCCTATGGCTTCAAACAAAGGTGTAGATCTAATCTTGGACCCTTGTGATGGTTCTATTATTAGATATTCACGTGTGAAAGGAGACAGAGGAAGACTCAAACAAGTTCTGTGTAATCTGTTGAGCAATGCTGTTAAATTCACTAATGAAGGGCACATAGCGGTTAGGGCAAGAGCTCAAAAGCCAACAAGCTTGCATAATTCATTAATGGCTAGCAGTGAAAAACATGGTGGATTCATGGAGCGTTTATCATCATGCTTATTTTTCAAGAAACGTAGTGATGAAGAAGCAGGAGGTGATCATGAAAGTGAATCCATGAGTCATGCAACACAGCAAACAGAAGCATGCTCTGTTATGGATTTTATATTTGAAGTGGATGACACAGGGAAAGGAATCCCCAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCACTTGGAGTTGGAGGAACTGGCTTGGGACTTGGGATTGTGCAATCATTGGTGCGTTTGATGCATGGGGACATTGAAATCTCAGAGAAGGACGTGGGAGAGAAGGGAACATGCTTCAAGTTCAACATTCTCCTTAATGCATACGAATCAATCACAAATCCTACTCCAAAACAACAACAACAAGAAGAAGAAGAACAAGGTTCTAACGAAAGAAGGCCATTACCAACCCTTCAAAGTTGTAGCTCAGGTTCAAGCATTTGTTCCATTAGCCCAAGACTGCGCATTCGCAGCTCCAGTCCCAAGCCAGAGCCTTCTCGTGTCGTTATGCTAATCGCCGACGAGTATCGCCGGAATGCCACTCAGAGGTTCATGGAGAGCTTAGGGATCAAAGTTATGGCCCCCAAACGATGGCAGGATCTGTTCCATGTCCTCAAGAAGATCAAACACAAGTGTCTTAATTCAAGCAGCCAGAGTAGCAGTTCTCATGGATCTGAGTATTTGAGTGTGAGCTCTACTCTTTCCCGTAGAAGAGGACTTCCATTGAGTTCTATGGATGCAAATTTCGATGACTCGATTCTATGTGATGGCCTTGTCCTTGTTGTGGTGGACACAAATGCAGGACCGGTTTTCGAGCTTTGGAAGATGGTTTCCAACTTCAAGAGAGGTCTCTGTAACCCTTGTCAAGTTGTCTGGTTAGATAAGAAGATGCTCTTCAAGGATCTTGATAGGAACTTGCTTGATCAGAAAGATATCGTTCTTCTGAAACCATTTCACGGTAGCAGGTTGTTTCAGGTTATAAGGCTTCTTCCGGAGTTCGGTGGAGGAAGTAGTAGCTCTCATAATAGAAGTGGGAAAAGTTTAAGGGATTGGAACTCATCATCATCAAGATACCATTCCTATCATGAAGGAGAAAGGAAAAGTGAAAATGATGGAAGAGAAATAATACAAGAAGGTGAGGATGAAAGTTGTTACAAGCCTTTAAGTGATAAGAAGATCTTGGTTGTTGATGATAATCCATTGATGAGGATGATTGCTTTCCGTACTTTGATCCAGCTGGGTGCTGTTATAGAACAGTGTGAGAATGGACAAGCAGCTGTGCAGCTGGTTGGTGATGGTTTAATCAAGAATTTTCCTAATCTTCCTTATGACTACATCTTAATGGATTGTCAGATGCCAGAAATGGATGGGTTCGAGGCAACAAGGGAAATAAGAAAGATAGAGAAGAGGTATGAAAATGTTCGCATTCCAATAATCGCATTAACAGCTGAGACAGACAAAATGAGTATAGATGCTGGAATGGACTTTCATTTGGAAAAACCTATCAAGAGACACAATTTTCTTGAAGCCATTCGATACATAAATGCTAGAAAGAGTTAG 3117 0.3981 MESTSTNFSRFFSSSLNSSSSISFIDIKTKVAPLLFQAFETVPHLDQILYIAMEGLSFSYYRDHLQTFSIFSNSSSSSSTINTYYIQHIDQDTGEAHGEPTKYNYSSINQNLILEALEFSYSYACNNTSLLGTNWTIIIDNNGHDPLFLNSGRVTRTNVISLGFSVTEITDFVLAHENNGDNQSLISMAWGTKDGRAIVQGIPNTRLVISNDTVSLESLDQNGNPNNGVEGTTIPCNNERFESSLNIQKNEYSIHCSTVDIMGTESVYVVAIPKNEVVSLDHHERYKKKGLALLIVMIFMILIALLSFLSMNARNAKREMRLRASLLKQMEATQQAERKNMNKTHAFAAANHDVRASLAGLTALIDMSFDLVQNGSELETNLKQMKGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSILLEDIVDLYYPMASNKGVDLILDPCDGSIIRYSRVKGDRGRLKQVLCNLLSNAVKFTNEGHIAVRARAQKPTSLHNSLMASSEKHGGFMERLSSCLFFKKRSDEEAGGDHESESMSHATQQTEACSVMDFIFEVDDTGKGIPKENYKSVFENYVQVKETALGVGGTGLGLGIVQSLVRLMHGDIEISEKDVGEKGTCFKFNILLNAYESITNPTPKQQQQEEEEQGSNERRPLPTLQSCSSGSSICSISPRLRIRSSSPKPEPSRVVMLIADEYRRNATQRFMESLGIKVMAPKRWQDLFHVLKKIKHKCLNSSSQSSSSHGSEYLSVSSTLSRRRGLPLSSMDANFDDSILCDGLVLVVVDTNAGPVFELWKMVSNFKRGLCNPCQVVWLDKKMLFKDLDRNLLDQKDIVLLKPFHGSRLFQVIRLLPEFGGGSSSSHNRSGKSLRDWNSSSSRYHSYHEGERKSENDGREIIQEGEDESCYKPLSDKKILVVDDNPLMRMIAFRTLIQLGAVIEQCENGQAAVQLVGDGLIKNFPNLPYDYILMDCQMPEMDGFEATREIRKIEKRYENVRIPIIALTAETDKMSIDAGMDFHLEKPIKRHNFLEAIRYINARKS 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152870g00002 1038 MobiDBLite consensus disorder prediction 878 892 - -
Stsc152870g00002 1038 Gene3D - 890 1037 - -
Stsc152870g00002 1038 MobiDBLite consensus disorder prediction 855 877 - -
Stsc152870g00002 1038 Gene3D - 329 409 - -
Stsc152870g00002 1038 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 623 IPR036890 -
Stsc152870g00002 1038 Gene3D - 410 630 IPR036890 -
Stsc152870g00002 1038 PRINTS Bacterial sensor protein C-terminal signature 585 603 IPR004358 GO:0016310|GO:0016772
Stsc152870g00002 1038 PRINTS Bacterial sensor protein C-terminal signature 569 579 IPR004358 GO:0016310|GO:0016772
Stsc152870g00002 1038 PRINTS Bacterial sensor protein C-terminal signature 551 565 IPR004358 GO:0016310|GO:0016772
Stsc152870g00002 1038 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1031 - -
Stsc152870g00002 1038 CDD REC_hyHK_CKI1_RcsC-like 912 1030 - -
Stsc152870g00002 1038 MobiDBLite consensus disorder prediction 855 892 - -
Stsc152870g00002 1038 MobiDBLite consensus disorder prediction 651 665 - -
Stsc152870g00002 1038 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 458 625 IPR003594 -
Stsc152870g00002 1038 ProSiteProfiles Histidine kinase domain profile. 349 627 IPR005467 -
Stsc152870g00002 1038 SUPERFAMILY CheY-like 907 1032 IPR011006 -
Stsc152870g00002 1038 ProSiteProfiles Response regulatory domain profile. 911 1034 IPR001789 GO:0000160
Stsc152870g00002 1038 SMART HisKA_10 342 408 IPR003661 GO:0000155|GO:0007165
Stsc152870g00002 1038 MobiDBLite consensus disorder prediction 634 665 - -
Stsc152870g00002 1038 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Stsc152870g00002 1038 SMART HKATPase_4 458 627 IPR003594 -
Stsc152870g00002 1038 SMART REC_2 910 1030 IPR001789 GO:0000160
Stsc152870g00002 1038 Pfam Response regulator receiver domain 912 1030 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152870g00002 Stsc-Chr152870 4132 9928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152870g00002 24 1037 Histidine Kinase Gene Family AT2G47430 39.631 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc152870g00002 HATPase_c 1.1e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152870g00002 - - adu:107464915 1358.58