Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152845g00002 ATGGCGGTGATCAAGAGGCAAAGAGAAGAAACAAACAATGAAAAAGAGATGAGCATAGATTTGGCAAGTAGCCTAATGTTGCTCTCAAGTGCTATAGAATTCAAGAACAGTAGTGATCCGGAGAAATTCGAGTGTAAGACATGCGGACGAAAGTTCGCATCTTTTCAAGCACTTGGCGGGCACAGAACCAGTCACAAGAGACAAAAACACGGTGATGAAGAAGAACAACTACTCAAATCAGAAGAGGCCAAGAATCCATCGACTCTAGGCAACAAAAAACCCAACAAGATGCACGAGTGTTCAATCTGTGGAATGGAATTCTCTTTGGGGCAGCAATTGGGTGGCCACATGAGAAAGCACAGAGATAATAATAATAAAGGGTTTTCTGATTCTATAAACCATGCTGTTGTTGCCAAAGTACCGGTTTTGAAAAGATCGAATAGCAAGAGGGTTATGTTTATGGACTTGAACTTGACGCCATTGGAGAATGACCTCAAGTTCTTGTTTGGAAACAAGGCACCTCAAGTTGATCTCTCTTTCTTCTGA 546 0.4176 MAVIKRQREETNNEKEMSIDLASSLMLLSSAIEFKNSSDPEKFECKTCGRKFASFQALGGHRTSHKRQKHGDEEEQLLKSEEAKNPSTLGNKKPNKMHECSICGMEFSLGQQLGGHMRKHRDNNNKGFSDSINHAVVAKVPVLKRSNSKRVMFMDLNLTPLENDLKFLFGNKAPQVDLSFF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152845g00002 181 Pfam C2H2-type zinc finger 98 122 - -
Stsc152845g00002 181 Pfam C2H2-type zinc finger 43 68 - -
Stsc152845g00002 181 PANTHER ZINC FINGER PROTEIN ZAT5 6 164 - -
Stsc152845g00002 181 Gene3D Classic Zinc Finger 91 150 - -
Stsc152845g00002 181 Gene3D Classic Zinc Finger 12 90 - -
Stsc152845g00002 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Stsc152845g00002 181 SMART c2h2final6 98 120 IPR013087 -
Stsc152845g00002 181 SMART c2h2final6 43 65 IPR013087 -
Stsc152845g00002 181 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Stsc152845g00002 181 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Stsc152845g00002 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Stsc152845g00002 181 MobiDBLite consensus disorder prediction 66 81 - -
Stsc152845g00002 181 MobiDBLite consensus disorder prediction 58 93 - -
Stsc152845g00002 181 SUPERFAMILY beta-beta-alpha zinc fingers 42 120 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152845g00002 Stsc-Chr152845 8816 9361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152845g00002 7 180 C2H2 Transcription Factor Family AT3G53600 45.161 2.46e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc152845g00002 zf-C2H2_6 9.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152845g00002 - - gmx:100526874 198.364