Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152842g00002 ATCACCAGAATGGAAGATAAAGCAAGGATAGGAAGAGTTTTTGGAAACAAATATCTTTACCTTGGAACCTACAGCACACAAGAGGAAACAACAAGAGCCTATGACATAGTAGCAATTGAGTACAGAGGAATTAATGCTGTAACCAATTTTGATTTAAGTAAATTACATTACATGGTTGAAACCTTCACACCTAACTCCCAAGATCCAAAACCTGAAATTCAAGAATTACTAAACTCTCAAACACTCACTTCCCCATCCAACTATACTTCAAATCCAATGCCCTTTGACAGTACTTCTTTCACCACTCTTGATCATCACCTGAATTATCCTGAAAATCAAGAAGTGTTCGATAACAAAATGTACCGATTCTCGAGCAGCAAGTTGTCTTCTCCCACGGCTCTTGGACTTCTCTTTCGCTCTTCGCTGTTTAGGGAATTGGTTGAAAAGTATTGA 453 0.3819 ITRMEDKARIGRVFGNKYLYLGTYSTQEETTRAYDIVAIEYRGINAVTNFDLSKLHYMVETFTPNSQDPKPEIQELLNSQTLTSPSNYTSNPMPFDSTSFTTLDHHLNYPENQEVFDNKMYRFSSSKLSSPTALGLLFRSSLFRELVEKY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152842g00002 150 CDD AP2 8 53 IPR001471 GO:0003700|GO:0006355
Stsc152842g00002 150 Gene3D AP2/ERF domain 4 53 IPR036955 GO:0003700|GO:0006355
Stsc152842g00002 150 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 86 - -
Stsc152842g00002 150 ProSiteProfiles AP2/ERF domain profile. 1 51 IPR001471 GO:0003700|GO:0006355
Stsc152842g00002 150 SMART rav1_2 1 57 IPR001471 GO:0003700|GO:0006355
Stsc152842g00002 150 SUPERFAMILY DNA-binding domain 8 53 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152842g00002 Stsc-Chr152842 3978 4551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152842g00002 7 54 AP2-EREBP Transcription Factor Family AT5G57390 72.917 8.74e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152842g00002 - - lja:Lj1g3v2952280.1 146.362